miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 13953 0.67 0.405736
Target:  5'- cGGCuGCGACGuGC-GCGugACGACa- -3'
miRNA:   3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 17668 0.67 0.414762
Target:  5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3'
miRNA:   3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 34702 0.67 0.405736
Target:  5'- gGGCGGCcgucgucGCGcuuGCGGUG-CGCGGCGAu -3'
miRNA:   3'- -CCGCCGc------UGCc--UGCCGCuGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 16056 0.67 0.42391
Target:  5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3'
miRNA:   3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 26401 0.67 0.433178
Target:  5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3'
miRNA:   3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 24604 0.67 0.414762
Target:  5'- cGCGGCGAUGaucuuGCGGCcGcACGCGugGu -3'
miRNA:   3'- cCGCCGCUGCc----UGCCG-C-UGUGCugCu -5'
28009 5' -59.7 NC_005887.1 + 18323 0.67 0.42391
Target:  5'- cGCGGCacugggGGCGcauCGGCGACauGCGACGu -3'
miRNA:   3'- cCGCCG------CUGCcu-GCCGCUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 15549 0.67 0.42391
Target:  5'- --gGGCGACGacuCGGCGcGCGCGACc- -3'
miRNA:   3'- ccgCCGCUGCcu-GCCGC-UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 30948 0.67 0.42391
Target:  5'- cGGCGGUGAUGu-CGGCGccCGCGuACGu -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGCu-GUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 17158 0.67 0.433177
Target:  5'- cGGCgaagaucgcgaGGCGugGGAgCGcGCGAaCGCGGCc- -3'
miRNA:   3'- -CCG-----------CCGCugCCU-GC-CGCU-GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 2890 0.67 0.414762
Target:  5'- aGGCGaCGACGGAcacguCGGCcGcCGCGaACGAc -3'
miRNA:   3'- -CCGCcGCUGCCU-----GCCG-CuGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 33710 0.67 0.42391
Target:  5'- cGUGGCG-CGG-CGGuCGAucugcucgauCGCGGCGAg -3'
miRNA:   3'- cCGCCGCuGCCuGCC-GCU----------GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 25274 0.67 0.433178
Target:  5'- uGCGaGCGGuCGaGCaGCGGCAUGACGGc -3'
miRNA:   3'- cCGC-CGCU-GCcUGcCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 32142 0.68 0.379414
Target:  5'- -cCGGCG-CGGGCauCGACGCGACGc -3'
miRNA:   3'- ccGCCGCuGCCUGccGCUGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26208 0.68 0.379414
Target:  5'- gGGCGGCGGUGGcCGGCcugcagcuGGCGC-ACGGg -3'
miRNA:   3'- -CCGCCGCUGCCuGCCG--------CUGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 10098 0.68 0.378556
Target:  5'- gGGCGGCccgcgccGACGGccagcugauCGGCuGCACGuACGAc -3'
miRNA:   3'- -CCGCCG-------CUGCCu--------GCCGcUGUGC-UGCU- -5'
28009 5' -59.7 NC_005887.1 + 4625 0.68 0.362513
Target:  5'- cGCGGCGcCGGugGccgcCGGCGCGAUc- -3'
miRNA:   3'- cCGCCGCuGCCugCc---GCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 27517 0.68 0.353443
Target:  5'- uGGCGugaauacGCGGCGGGCGGUcAUggGCGGCGc -3'
miRNA:   3'- -CCGC-------CGCUGCCUGCCGcUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 26011 0.68 0.346142
Target:  5'- gGGCGGCGuCGGG-GGCGAgGCuacCGGg -3'
miRNA:   3'- -CCGCCGCuGCCUgCCGCUgUGcu-GCU- -5'
28009 5' -59.7 NC_005887.1 + 2168 0.68 0.382857
Target:  5'- cGGCGGCGAuucccuucgugccguCGcGcagcucacacGCGGCGAgCGCGGCGc -3'
miRNA:   3'- -CCGCCGCU---------------GC-C----------UGCCGCU-GUGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.