Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 12141 | 0.68 | 0.370898 |
Target: 5'- aGGCcGCGACGcGGCguGGCuGGC-CGGCGAg -3' miRNA: 3'- -CCGcCGCUGC-CUG--CCG-CUGuGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 14659 | 0.68 | 0.354261 |
Target: 5'- cGCGGCGA-GGuACGGCacguGAUGCaGACGAu -3' miRNA: 3'- cCGCCGCUgCC-UGCCG----CUGUG-CUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 5014 | 0.68 | 0.346143 |
Target: 5'- uGCGGCGACcGAugccagugcCGGCGcuGCuGCGACGAc -3' miRNA: 3'- cCGCCGCUGcCU---------GCCGC--UG-UGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15652 | 0.69 | 0.330308 |
Target: 5'- cGCGGCcGCGcGACGGCuGuauCGCGACa- -3' miRNA: 3'- cCGCCGcUGC-CUGCCG-Cu--GUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 6167 | 0.69 | 0.329531 |
Target: 5'- cGGCacGGUGAucccgguCGGcACGGUGACGCGccGCGAc -3' miRNA: 3'- -CCG--CCGCU-------GCC-UGCCGCUGUGC--UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 21037 | 0.69 | 0.299538 |
Target: 5'- cGGuCGGCG-CGGugGGCGugcccgugaauguGgGCGACGc -3' miRNA: 3'- -CC-GCCGCuGCCugCCGC-------------UgUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 13953 | 0.67 | 0.405736 |
Target: 5'- cGGCuGCGACGuGC-GCGugACGACa- -3' miRNA: 3'- -CCGcCGCUGCcUGcCGCugUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 17668 | 0.67 | 0.414762 |
Target: 5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3' miRNA: 3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 29770 | 0.67 | 0.421153 |
Target: 5'- cGGCcgGGuCGGCGGAcaccaugcgcaugcCGGCGGCcguCGACGc -3' miRNA: 3'- -CCG--CC-GCUGCCU--------------GCCGCUGu--GCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 39399 | 0.66 | 0.471384 |
Target: 5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3' miRNA: 3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 27405 | 0.66 | 0.471384 |
Target: 5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3' miRNA: 3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 11007 | 0.66 | 0.461669 |
Target: 5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3' miRNA: 3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 26352 | 0.66 | 0.45206 |
Target: 5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3' miRNA: 3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 9208 | 0.66 | 0.442562 |
Target: 5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3' miRNA: 3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 38635 | 0.66 | 0.442562 |
Target: 5'- cGCGGaucGCGGuCGGCG-CGCGGCu- -3' miRNA: 3'- cCGCCgc-UGCCuGCCGCuGUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15502 | 0.66 | 0.442562 |
Target: 5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3' miRNA: 3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15096 | 0.66 | 0.442562 |
Target: 5'- -uUGGCGacGCGGGcCGGCG-CGCGAUGc -3' miRNA: 3'- ccGCCGC--UGCCU-GCCGCuGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 25274 | 0.67 | 0.433178 |
Target: 5'- uGCGaGCGGuCGaGCaGCGGCAUGACGGc -3' miRNA: 3'- cCGC-CGCU-GCcUGcCGCUGUGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 26401 | 0.67 | 0.433178 |
Target: 5'- aGCGGCGuGCGG-CGcGUGGC-CGGCGc -3' miRNA: 3'- cCGCCGC-UGCCuGC-CGCUGuGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 16056 | 0.67 | 0.42391 |
Target: 5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3' miRNA: 3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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