miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 1931 0.73 0.167501
Target:  5'- gGGCGGCGucauGCGuGACGGCGAUcgGugGGu -3'
miRNA:   3'- -CCGCCGC----UGC-CUGCCGCUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 2704 0.73 0.171977
Target:  5'- gGGCGGCaaGCGGcCGaGCcGCGCGACGAc -3'
miRNA:   3'- -CCGCCGc-UGCCuGC-CGcUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 35121 0.7 0.286048
Target:  5'- gGGCGGgGcGCGGAucggaaucCGGCGcCACgGACGGg -3'
miRNA:   3'- -CCGCCgC-UGCCU--------GCCGCuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 19722 0.7 0.279143
Target:  5'- aGgGGUGucGCGGAucuggugcauUGGCGGCACGACGc -3'
miRNA:   3'- cCgCCGC--UGCCU----------GCCGCUGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 14820 0.7 0.272371
Target:  5'- uGGCGGCcgcGACGcuGAUGGCGgGCACGuucGCGGg -3'
miRNA:   3'- -CCGCCG---CUGC--CUGCCGC-UGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 3905 0.7 0.272371
Target:  5'- cGGauGUG-CGGAUGGCGAacgaCAUGGCGAa -3'
miRNA:   3'- -CCgcCGCuGCCUGCCGCU----GUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 6045 0.7 0.259223
Target:  5'- gGGUGGUGcUGGugGcaGCGGCGCGGCa- -3'
miRNA:   3'- -CCGCCGCuGCCugC--CGCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 9276 0.71 0.24048
Target:  5'- -aCGGCGGuCGGcACGGCGACGCcGCa- -3'
miRNA:   3'- ccGCCGCU-GCC-UGCCGCUGUGcUGcu -5'
28009 5' -59.7 NC_005887.1 + 14527 0.71 0.228622
Target:  5'- uGCaGGCG-CGGccguCGGCGGCGCGuCGAu -3'
miRNA:   3'- cCG-CCGCuGCCu---GCCGCUGUGCuGCU- -5'
28009 5' -59.7 NC_005887.1 + 18552 0.71 0.22288
Target:  5'- gGGCGGCGGCGc-CGGCuuCGCgGGCGAc -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGcuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 4529 0.72 0.211765
Target:  5'- cGGCGGCGuccCGGucgaGGCGAUGagcacCGACGAg -3'
miRNA:   3'- -CCGCCGCu--GCCug--CCGCUGU-----GCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 1487 0.72 0.211765
Target:  5'- cGGCGuGCGGCGcuCGcGCGGCGCGGCc- -3'
miRNA:   3'- -CCGC-CGCUGCcuGC-CGCUGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 5404 0.72 0.190963
Target:  5'- cGGUGaacCGGCGGGCGGCGcCGCaGCGAc -3'
miRNA:   3'- -CCGCc--GCUGCCUGCCGCuGUGcUGCU- -5'
28009 5' -59.7 NC_005887.1 + 16756 0.73 0.18125
Target:  5'- uGCGGCagacGAUGGGCGcgauCGACGCGAUGAa -3'
miRNA:   3'- cCGCCG----CUGCCUGCc---GCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 9208 0.66 0.442562
Target:  5'- cGCGGC-ACGGuCGGCugcuucuaccGACgcaACGGCGAg -3'
miRNA:   3'- cCGCCGcUGCCuGCCG----------CUG---UGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 26352 0.66 0.45206
Target:  5'- cGGCucGCGGCGGgucuGCGcGCG-CACGACa- -3'
miRNA:   3'- -CCGc-CGCUGCC----UGC-CGCuGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 11007 0.66 0.461669
Target:  5'- cGUGGgccaucgaCGACGGccCGGuCGGCACGugGGa -3'
miRNA:   3'- cCGCC--------GCUGCCu-GCC-GCUGUGCugCU- -5'
28009 5' -59.7 NC_005887.1 + 27405 0.66 0.471384
Target:  5'- uGCGGCGcguCGuACGGCagcGCGCGGCGu -3'
miRNA:   3'- cCGCCGCu--GCcUGCCGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 39399 0.66 0.471384
Target:  5'- cGGCGaG-GAUGGucGCGGCGGugcCGCGGCGc -3'
miRNA:   3'- -CCGC-CgCUGCC--UGCCGCU---GUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 35043 1.1 0.000294
Target:  5'- cGGCGGCGACGGACGGCGACACGACGAc -3'
miRNA:   3'- -CCGCCGCUGCCUGCCGCUGUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.