Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28009 | 5' | -59.7 | NC_005887.1 | + | 3905 | 0.7 | 0.272371 |
Target: 5'- cGGauGUG-CGGAUGGCGAacgaCAUGGCGAa -3' miRNA: 3'- -CCgcCGCuGCCUGCCGCU----GUGCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 14820 | 0.7 | 0.272371 |
Target: 5'- uGGCGGCcgcGACGcuGAUGGCGgGCACGuucGCGGg -3' miRNA: 3'- -CCGCCG---CUGC--CUGCCGC-UGUGC---UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 19722 | 0.7 | 0.279143 |
Target: 5'- aGgGGUGucGCGGAucuggugcauUGGCGGCACGACGc -3' miRNA: 3'- cCgCCGC--UGCCU----------GCCGCUGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 35121 | 0.7 | 0.286048 |
Target: 5'- gGGCGGgGcGCGGAucggaaucCGGCGcCACgGACGGg -3' miRNA: 3'- -CCGCCgC-UGCCU--------GCCGCuGUG-CUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 8385 | 0.7 | 0.286048 |
Target: 5'- cGGUGcUGACGGACGcCGcACGCGACGu -3' miRNA: 3'- -CCGCcGCUGCCUGCcGC-UGUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 14207 | 0.69 | 0.293088 |
Target: 5'- cGCGGCcucgGACaGGGCGGCGccgcgcuguucgGCGCGGCa- -3' miRNA: 3'- cCGCCG----CUG-CCUGCCGC------------UGUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 32426 | 0.69 | 0.293088 |
Target: 5'- cGGCGGCGAUGuggccGGCGGCGAuCAgGuuGCGc -3' miRNA: 3'- -CCGCCGCUGC-----CUGCCGCU-GUgC--UGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 1986 | 0.69 | 0.293088 |
Target: 5'- cGCGcGCGACGGcggcACGGCcGCGCucGACGGc -3' miRNA: 3'- cCGC-CGCUGCC----UGCCGcUGUG--CUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 21037 | 0.69 | 0.299538 |
Target: 5'- cGGuCGGCG-CGGugGGCGugcccgugaauguGgGCGACGc -3' miRNA: 3'- -CC-GCCGCuGCCugCCGC-------------UgUGCUGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 17275 | 0.69 | 0.30757 |
Target: 5'- gGGCGaGaCGuCGGGCGGCGcCGCGcGCGc -3' miRNA: 3'- -CCGC-C-GCuGCCUGCCGCuGUGC-UGCu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 36511 | 0.69 | 0.30757 |
Target: 5'- uGCGGuCGAccgcagcauCGGGCGGCGGCAgGuauuucGCGAa -3' miRNA: 3'- cCGCC-GCU---------GCCUGCCGCUGUgC------UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 9463 | 0.69 | 0.315014 |
Target: 5'- aGGUGGUcACGGguACGGUGGCgACGaACGAc -3' miRNA: 3'- -CCGCCGcUGCC--UGCCGCUG-UGC-UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 19809 | 0.69 | 0.315014 |
Target: 5'- uGGC-GCGAcCGGAaaCGGgGGCGuCGACGAc -3' miRNA: 3'- -CCGcCGCU-GCCU--GCCgCUGU-GCUGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 9788 | 0.69 | 0.322594 |
Target: 5'- cGGCaugacgGGCGAUGaGugGGUGAUugGGCc- -3' miRNA: 3'- -CCG------CCGCUGC-CugCCGCUGugCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 5623 | 0.69 | 0.322594 |
Target: 5'- uGCgGGCGACGcGGugaaGGCGAUACG-CGAg -3' miRNA: 3'- cCG-CCGCUGC-CUg---CCGCUGUGCuGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 5814 | 0.69 | 0.322594 |
Target: 5'- cGGCGGCGAuCGaGuCGGCGcggguCGCGaaggGCGAa -3' miRNA: 3'- -CCGCCGCU-GC-CuGCCGCu----GUGC----UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 6167 | 0.69 | 0.329531 |
Target: 5'- cGGCacGGUGAucccgguCGGcACGGUGACGCGccGCGAc -3' miRNA: 3'- -CCG--CCGCU-------GCC-UGCCGCUGUGC--UGCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 15652 | 0.69 | 0.330308 |
Target: 5'- cGCGGCcGCGcGACGGCuGuauCGCGACa- -3' miRNA: 3'- cCGCCGcUGC-CUGCCG-Cu--GUGCUGcu -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 26011 | 0.68 | 0.346142 |
Target: 5'- gGGCGGCGuCGGG-GGCGAgGCuacCGGg -3' miRNA: 3'- -CCGCCGCuGCCUgCCGCUgUGcu-GCU- -5' |
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28009 | 5' | -59.7 | NC_005887.1 | + | 5014 | 0.68 | 0.346143 |
Target: 5'- uGCGGCGACcGAugccagugcCGGCGcuGCuGCGACGAc -3' miRNA: 3'- cCGCCGCUGcCU---------GCCGC--UG-UGCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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