miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28009 5' -59.7 NC_005887.1 + 14696 0.76 0.103093
Target:  5'- gGGCucgucGCGGCGGGCGGgccgGGCGCGGCGAu -3'
miRNA:   3'- -CCGc----CGCUGCCUGCCg---CUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 14820 0.7 0.272371
Target:  5'- uGGCGGCcgcGACGcuGAUGGCGgGCACGuucGCGGg -3'
miRNA:   3'- -CCGCCG---CUGC--CUGCCGC-UGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 15096 0.66 0.442562
Target:  5'- -uUGGCGacGCGGGcCGGCG-CGCGAUGc -3'
miRNA:   3'- ccGCCGC--UGCCU-GCCGCuGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 15502 0.66 0.442562
Target:  5'- cGGCGGCaACGGcuacCGGCaGACGCGcCc- -3'
miRNA:   3'- -CCGCCGcUGCCu---GCCG-CUGUGCuGcu -5'
28009 5' -59.7 NC_005887.1 + 15549 0.67 0.42391
Target:  5'- --gGGCGACGacuCGGCGcGCGCGACc- -3'
miRNA:   3'- ccgCCGCUGCcu-GCCGC-UGUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 15652 0.69 0.330308
Target:  5'- cGCGGCcGCGcGACGGCuGuauCGCGACa- -3'
miRNA:   3'- cCGCCGcUGC-CUGCCG-Cu--GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 16056 0.67 0.42391
Target:  5'- cGGCGGCaacauccuuGCGGucuuCGGCcACugGugGAa -3'
miRNA:   3'- -CCGCCGc--------UGCCu---GCCGcUGugCugCU- -5'
28009 5' -59.7 NC_005887.1 + 16756 0.73 0.18125
Target:  5'- uGCGGCagacGAUGGGCGcgauCGACGCGAUGAa -3'
miRNA:   3'- cCGCCG----CUGCCUGCc---GCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 16869 0.75 0.128201
Target:  5'- cGCGGCG-CGGACGGCucGACAgGcaACGAg -3'
miRNA:   3'- cCGCCGCuGCCUGCCG--CUGUgC--UGCU- -5'
28009 5' -59.7 NC_005887.1 + 17158 0.67 0.433177
Target:  5'- cGGCgaagaucgcgaGGCGugGGAgCGcGCGAaCGCGGCc- -3'
miRNA:   3'- -CCG-----------CCGCugCCU-GC-CGCU-GUGCUGcu -5'
28009 5' -59.7 NC_005887.1 + 17275 0.69 0.30757
Target:  5'- gGGCGaGaCGuCGGGCGGCGcCGCGcGCGc -3'
miRNA:   3'- -CCGC-C-GCuGCCUGCCGCuGUGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 17400 0.66 0.481202
Target:  5'- cGCuGGuCGAUcacGuCGGCGGCAUGGCGAa -3'
miRNA:   3'- cCG-CC-GCUGc--CuGCCGCUGUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 17668 0.67 0.414762
Target:  5'- aGGCGGuCGA-GGAUGccggccGCGGCugGACa- -3'
miRNA:   3'- -CCGCC-GCUgCCUGC------CGCUGugCUGcu -5'
28009 5' -59.7 NC_005887.1 + 17911 0.74 0.138999
Target:  5'- cGGCGGCgucacagguugGACGGACGcGCuacGCACGGCGu -3'
miRNA:   3'- -CCGCCG-----------CUGCCUGC-CGc--UGUGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 18323 0.67 0.42391
Target:  5'- cGCGGCacugggGGCGcauCGGCGACauGCGACGu -3'
miRNA:   3'- cCGCCG------CUGCcu-GCCGCUG--UGCUGCu -5'
28009 5' -59.7 NC_005887.1 + 18552 0.71 0.22288
Target:  5'- gGGCGGCGGCGc-CGGCuuCGCgGGCGAc -3'
miRNA:   3'- -CCGCCGCUGCcuGCCGcuGUG-CUGCU- -5'
28009 5' -59.7 NC_005887.1 + 18795 0.72 0.201131
Target:  5'- cGGcCGGCGauGCGGGCGGCGucaGCGuACGc -3'
miRNA:   3'- -CC-GCCGC--UGCCUGCCGCug-UGC-UGCu -5'
28009 5' -59.7 NC_005887.1 + 18916 0.77 0.089831
Target:  5'- cGGCGGgaUGGCGGGCGGCu--GCGACGAg -3'
miRNA:   3'- -CCGCC--GCUGCCUGCCGcugUGCUGCU- -5'
28009 5' -59.7 NC_005887.1 + 19188 0.74 0.154694
Target:  5'- cGGCgcgGGCGugGaGACaGGCGGCGCGguuACGAc -3'
miRNA:   3'- -CCG---CCGCugC-CUG-CCGCUGUGC---UGCU- -5'
28009 5' -59.7 NC_005887.1 + 19541 0.74 0.144319
Target:  5'- aGGCGuG-GACGGACGGCGucgauuacguugcagGCACGuCGAg -3'
miRNA:   3'- -CCGC-CgCUGCCUGCCGC---------------UGUGCuGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.