miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2801 5' -55 NC_001491.2 + 147332 0.65 0.955904
Target:  5'- -cCGU-GGAuGGcACGGucgucCGAGGAGGAGCc -3'
miRNA:   3'- caGCAgCCU-CC-UGCU-----GCUUCUCCUCG- -5'
2801 5' -55 NC_001491.2 + 138090 0.65 0.955904
Target:  5'- -gCGaaggUGGGGGccaaGACGAGGuGGGGCg -3'
miRNA:   3'- caGCa---GCCUCCug--CUGCUUCuCCUCG- -5'
2801 5' -55 NC_001491.2 + 146677 0.66 0.94784
Target:  5'- cUCG--GGAGGGCaGGCgGGAGAGGGGa -3'
miRNA:   3'- cAGCagCCUCCUG-CUG-CUUCUCCUCg -5'
2801 5' -55 NC_001491.2 + 141962 0.66 0.943465
Target:  5'- gGUgGUCGGuGGuCGGCccauGGGGGAGg -3'
miRNA:   3'- -CAgCAGCCuCCuGCUGcu--UCUCCUCg -5'
2801 5' -55 NC_001491.2 + 125576 0.66 0.938856
Target:  5'- -cCGUCGGAGGGgGGgGAugcgcgccccGAGGcGGCg -3'
miRNA:   3'- caGCAGCCUCCUgCUgCUu---------CUCC-UCG- -5'
2801 5' -55 NC_001491.2 + 18978 0.67 0.928935
Target:  5'- uUCGUcCGGAGGGCGA-GAcucgcGAGG-GCc -3'
miRNA:   3'- cAGCA-GCCUCCUGCUgCUu----CUCCuCG- -5'
2801 5' -55 NC_001491.2 + 117971 0.67 0.91807
Target:  5'- -gCGaCGaAGG-CGGCGAGGAGGAGa -3'
miRNA:   3'- caGCaGCcUCCuGCUGCUUCUCCUCg -5'
2801 5' -55 NC_001491.2 + 146637 0.67 0.906264
Target:  5'- --aGUCcGGGGACGGCGGacgccccgccgcGGAGGcGCa -3'
miRNA:   3'- cagCAGcCUCCUGCUGCU------------UCUCCuCG- -5'
2801 5' -55 NC_001491.2 + 147276 0.67 0.906264
Target:  5'- --gGcCGGGGaGGCGGCcgccuGAGGGGAGCg -3'
miRNA:   3'- cagCaGCCUC-CUGCUGc----UUCUCCUCG- -5'
2801 5' -55 NC_001491.2 + 125099 0.68 0.898092
Target:  5'- -gCGgcCGGGGGggccgccaacuccaGCGGCGAGGAGGcGCc -3'
miRNA:   3'- caGCa-GCCUCC--------------UGCUGCUUCUCCuCG- -5'
2801 5' -55 NC_001491.2 + 53213 0.68 0.893532
Target:  5'- -gCGUCgGGAGGGcCGugGGcuaccAG-GGAGCa -3'
miRNA:   3'- caGCAG-CCUCCU-GCugCU-----UCuCCUCG- -5'
2801 5' -55 NC_001491.2 + 145161 0.68 0.886824
Target:  5'- cUCGUCcaucGAGGACGAgGAcGAGGAc- -3'
miRNA:   3'- cAGCAGc---CUCCUGCUgCUuCUCCUcg -5'
2801 5' -55 NC_001491.2 + 68162 0.68 0.886141
Target:  5'- -aCGUuccCGGAGGAgGGgGAAGAuacgaacGGGGCg -3'
miRNA:   3'- caGCA---GCCUCCUgCUgCUUCU-------CCUCG- -5'
2801 5' -55 NC_001491.2 + 144792 0.68 0.886141
Target:  5'- --aGUCGGA-GACGGCGGAGGgaugaccaccgccGGGGUg -3'
miRNA:   3'- cagCAGCCUcCUGCUGCUUCU-------------CCUCG- -5'
2801 5' -55 NC_001491.2 + 100165 0.68 0.872747
Target:  5'- cGUCGUCGGAGaaacugauguuGAcccuCGACGGAcAGGAGg -3'
miRNA:   3'- -CAGCAGCCUC-----------CU----GCUGCUUcUCCUCg -5'
2801 5' -55 NC_001491.2 + 148405 0.68 0.872747
Target:  5'- -aCGUUGGAGGAgCGGCacAGccucAGGGGCg -3'
miRNA:   3'- caGCAGCCUCCU-GCUGcuUC----UCCUCG- -5'
2801 5' -55 NC_001491.2 + 90975 0.69 0.85005
Target:  5'- aGUCGUCaaGGGGGugGugGGAaauAGG-GCa -3'
miRNA:   3'- -CAGCAG--CCUCCugCugCUUc--UCCuCG- -5'
2801 5' -55 NC_001491.2 + 3047 0.69 0.833932
Target:  5'- uUCGgccagggCGGcgAGcGACGGCGAgcgauugcgucuAGAGGAGCa -3'
miRNA:   3'- cAGCa------GCC--UC-CUGCUGCU------------UCUCCUCG- -5'
2801 5' -55 NC_001491.2 + 124902 0.7 0.781478
Target:  5'- gGUCGa-GGGGGugGuggcCGGAGAGGuGCu -3'
miRNA:   3'- -CAGCagCCUCCugCu---GCUUCUCCuCG- -5'
2801 5' -55 NC_001491.2 + 19668 0.7 0.772222
Target:  5'- gGUUGguccUGGGGGAaacuauguuCGACGGAGGGGAGg -3'
miRNA:   3'- -CAGCa---GCCUCCU---------GCUGCUUCUCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.