miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 3' -53.2 NC_005887.1 + 14532 0.66 0.80132
Target:  5'- gCGCGGCCgUCGGcggcgCGUCGaucGGCa -3'
miRNA:   3'- gGCGCCGGaAGCUuaggaGCAGU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 2975 0.66 0.80132
Target:  5'- gCCGcCGGCC-UCGGuuacugGUCCUUGaUGAGUg -3'
miRNA:   3'- -GGC-GCCGGaAGCU------UAGGAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 26165 0.66 0.798373
Target:  5'- gCGCGGCCUcuUCGcgcagguucgccucGAUCgCUCGcgCAcucGGCg -3'
miRNA:   3'- gGCGCCGGA--AGC--------------UUAG-GAGCa-GU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 3814 0.66 0.791433
Target:  5'- -aGCGGCUUUCGcaccuUCCcguUCGcaaUCGGGCg -3'
miRNA:   3'- ggCGCCGGAAGCuu---AGG---AGC---AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 24145 0.66 0.791433
Target:  5'- gCGcCGGgCUUCGAGaucgCCUCG-CAGGa -3'
miRNA:   3'- gGC-GCCgGAAGCUUa---GGAGCaGUUCg -5'
28010 3' -53.2 NC_005887.1 + 4287 0.66 0.781374
Target:  5'- aUCGCGcGCgaggUCGAcAUCCUCGcCGAGg -3'
miRNA:   3'- -GGCGC-CGga--AGCU-UAGGAGCaGUUCg -5'
28010 3' -53.2 NC_005887.1 + 40175 0.66 0.781374
Target:  5'- aCCGCGGCCggCGucaggCCgaaGUCcaugccgauccaGAGCg -3'
miRNA:   3'- -GGCGCCGGaaGCuua--GGag-CAG------------UUCG- -5'
28010 3' -53.2 NC_005887.1 + 26596 0.66 0.781374
Target:  5'- gCCGCGGCCUuguacuUCaugcCCUgGUCcuGCa -3'
miRNA:   3'- -GGCGCCGGA------AGcuuaGGAgCAGuuCG- -5'
28010 3' -53.2 NC_005887.1 + 8223 0.66 0.781374
Target:  5'- uCUGUGGCgaaaUCGaAAUCCUCuGcCGAGCg -3'
miRNA:   3'- -GGCGCCGga--AGC-UUAGGAG-CaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 23955 0.66 0.771154
Target:  5'- gCCGCGGCgUaggccaUCGggUUCg---CGAGCg -3'
miRNA:   3'- -GGCGCCGgA------AGCuuAGGagcaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 5971 0.66 0.764949
Target:  5'- aUCGCGGCCgucgUCGAGaucaggagcacgcgcUCCugucccccUCGUC-GGCc -3'
miRNA:   3'- -GGCGCCGGa---AGCUU---------------AGG--------AGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 29112 0.66 0.760784
Target:  5'- aCgGCGGUCagCGucuucucugCCUCGUCuGGCg -3'
miRNA:   3'- -GgCGCCGGaaGCuua------GGAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 874 0.66 0.760784
Target:  5'- gCGUGGCCcgCGccgCCggacgaGUCAGGCg -3'
miRNA:   3'- gGCGCCGGaaGCuuaGGag----CAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 34655 0.66 0.760784
Target:  5'- gCGcCGGCUUgccgguuucCGGAUCCgccacgUUGUCGAGCa -3'
miRNA:   3'- gGC-GCCGGAa--------GCUUAGG------AGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 8606 0.67 0.750278
Target:  5'- cUCGUgaaGGCCggCGcgcuGAUCCUCGccgcgaUCGAGCa -3'
miRNA:   3'- -GGCG---CCGGaaGC----UUAGGAGC------AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 1597 0.67 0.750278
Target:  5'- gCGCGGCgCgccaacggCGAucgCCUCGacgCGGGCg -3'
miRNA:   3'- gGCGCCG-Gaa------GCUua-GGAGCa--GUUCG- -5'
28010 3' -53.2 NC_005887.1 + 30816 0.67 0.750277
Target:  5'- aCCGCGGCC-UCGGccaGUUCgaCGUCcaucuGCa -3'
miRNA:   3'- -GGCGCCGGaAGCU---UAGGa-GCAGuu---CG- -5'
28010 3' -53.2 NC_005887.1 + 41226 0.67 0.74922
Target:  5'- gCGCGGCUucgucagUUCGAGcUUgUCGUUcAGCa -3'
miRNA:   3'- gGCGCCGG-------AAGCUU-AGgAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 7835 0.67 0.739646
Target:  5'- cCCGUGGUCgcagCGAcagCa-CGUCGAGCa -3'
miRNA:   3'- -GGCGCCGGaa--GCUua-GgaGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 30736 0.67 0.739646
Target:  5'- gCGUGGCCUUCGcgacuUCgC-CGUCGgucAGCu -3'
miRNA:   3'- gGCGCCGGAAGCuu---AG-GaGCAGU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.