miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 3' -53.2 NC_005887.1 + 453 0.71 0.507894
Target:  5'- gCGgGGUCUuucuugaucgUCGGAUCCUUGUCGAa- -3'
miRNA:   3'- gGCgCCGGA----------AGCUUAGGAGCAGUUcg -5'
28010 3' -53.2 NC_005887.1 + 874 0.66 0.760784
Target:  5'- gCGUGGCCcgCGccgCCggacgaGUCAGGCg -3'
miRNA:   3'- gGCGCCGGaaGCuuaGGag----CAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 1597 0.67 0.750278
Target:  5'- gCGCGGCgCgccaacggCGAucgCCUCGacgCGGGCg -3'
miRNA:   3'- gGCGCCG-Gaa------GCUua-GGAGCa--GUUCG- -5'
28010 3' -53.2 NC_005887.1 + 1697 0.67 0.707124
Target:  5'- gUGCGGCCggugaUCGGcgCgcgCUCGUCAGuGCc -3'
miRNA:   3'- gGCGCCGGa----AGCUuaG---GAGCAGUU-CG- -5'
28010 3' -53.2 NC_005887.1 + 2029 0.68 0.673913
Target:  5'- uCgGCGGCgaacguCUUCGGcaUgUCGUCGAGCu -3'
miRNA:   3'- -GgCGCCG------GAAGCUuaGgAGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 2947 0.71 0.466126
Target:  5'- gCCGCGGCaccgccgCGAccAUCCUCG-CcGGCg -3'
miRNA:   3'- -GGCGCCGgaa----GCU--UAGGAGCaGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 2975 0.66 0.80132
Target:  5'- gCCGcCGGCC-UCGGuuacugGUCCUUGaUGAGUg -3'
miRNA:   3'- -GGC-GCCGGaAGCU------UAGGAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 3717 0.68 0.673913
Target:  5'- gCCGCGcGCCgacCGcGAUCCgCG-CAAGCu -3'
miRNA:   3'- -GGCGC-CGGaa-GC-UUAGGaGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 3814 0.66 0.791433
Target:  5'- -aGCGGCUUUCGcaccuUCCcguUCGcaaUCGGGCg -3'
miRNA:   3'- ggCGCCGGAAGCuu---AGG---AGC---AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 4287 0.66 0.781374
Target:  5'- aUCGCGcGCgaggUCGAcAUCCUCGcCGAGg -3'
miRNA:   3'- -GGCGC-CGga--AGCU-UAGGAGCaGUUCg -5'
28010 3' -53.2 NC_005887.1 + 5971 0.66 0.764949
Target:  5'- aUCGCGGCCgucgUCGAGaucaggagcacgcgcUCCugucccccUCGUC-GGCc -3'
miRNA:   3'- -GGCGCCGGa---AGCUU---------------AGG--------AGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 7835 0.67 0.739646
Target:  5'- cCCGUGGUCgcagCGAcagCa-CGUCGAGCa -3'
miRNA:   3'- -GGCGCCGGaa--GCUua-GgaGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 8223 0.66 0.781374
Target:  5'- uCUGUGGCgaaaUCGaAAUCCUCuGcCGAGCg -3'
miRNA:   3'- -GGCGCCGga--AGC-UUAGGAG-CaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 8606 0.67 0.750278
Target:  5'- cUCGUgaaGGCCggCGcgcuGAUCCUCGccgcgaUCGAGCa -3'
miRNA:   3'- -GGCG---CCGGaaGC----UUAGGAGC------AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 11326 0.69 0.629108
Target:  5'- gCCGCGGCCUgCGAAUaguggCCUgCGcCGcGCc -3'
miRNA:   3'- -GGCGCCGGAaGCUUA-----GGA-GCaGUuCG- -5'
28010 3' -53.2 NC_005887.1 + 13665 0.68 0.68504
Target:  5'- uUCGCGGgCgugaucgCGggUUgUCGUCuGGCg -3'
miRNA:   3'- -GGCGCCgGaa-----GCuuAGgAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 13860 0.68 0.68504
Target:  5'- cCCGcCGGCg--CGcGUCUacuUCGUCGAGCu -3'
miRNA:   3'- -GGC-GCCGgaaGCuUAGG---AGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 14532 0.66 0.80132
Target:  5'- gCGCGGCCgUCGGcggcgCGUCGaucGGCa -3'
miRNA:   3'- gGCGCCGGaAGCUuaggaGCAGU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 15283 0.68 0.651548
Target:  5'- gCGCGGCac-CGAGUUCgugaagaaGUCGGGCg -3'
miRNA:   3'- gGCGCCGgaaGCUUAGGag------CAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 16867 0.68 0.685039
Target:  5'- aCCGCGGCg--CGGAcggCUCGaCAGGCa -3'
miRNA:   3'- -GGCGCCGgaaGCUUag-GAGCaGUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.