miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 3' -53.2 NC_005887.1 + 17415 0.7 0.540229
Target:  5'- uCgGCGGCauggCGAAgaacaucgCgCUCGUCGAGCg -3'
miRNA:   3'- -GgCGCCGgaa-GCUUa-------G-GAGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 19952 0.67 0.718056
Target:  5'- uCCGUGGCgUUCGAGuUUCUcaucCGUCuuGCu -3'
miRNA:   3'- -GGCGCCGgAAGCUU-AGGA----GCAGuuCG- -5'
28010 3' -53.2 NC_005887.1 + 22870 0.68 0.673913
Target:  5'- gCCGcCGGCCgcuaUCaGAUCCUCG-CGcGCu -3'
miRNA:   3'- -GGC-GCCGGa---AGcUUAGGAGCaGUuCG- -5'
28010 3' -53.2 NC_005887.1 + 23955 0.66 0.771154
Target:  5'- gCCGCGGCgUaggccaUCGggUUCg---CGAGCg -3'
miRNA:   3'- -GGCGCCGgA------AGCuuAGGagcaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 24145 0.66 0.791433
Target:  5'- gCGcCGGgCUUCGAGaucgCCUCG-CAGGa -3'
miRNA:   3'- gGC-GCCgGAAGCUUa---GGAGCaGUUCg -5'
28010 3' -53.2 NC_005887.1 + 24682 0.68 0.667216
Target:  5'- gCCGCGGCCggC--AUCCUCGaccgccuggaugauaUCcAGCg -3'
miRNA:   3'- -GGCGCCGGaaGcuUAGGAGC---------------AGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 26086 0.67 0.728901
Target:  5'- -aGCGGCCcgcgcggCGuuUCauggCGUCGAGCa -3'
miRNA:   3'- ggCGCCGGaa-----GCuuAGga--GCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 26144 0.75 0.296361
Target:  5'- uUCGCGGCgcUCGAcgacGUCCUCGUCGAu- -3'
miRNA:   3'- -GGCGCCGgaAGCU----UAGGAGCAGUUcg -5'
28010 3' -53.2 NC_005887.1 + 26165 0.66 0.798373
Target:  5'- gCGCGGCCUcuUCGcgcagguucgccucGAUCgCUCGcgCAcucGGCg -3'
miRNA:   3'- gGCGCCGGA--AGC--------------UUAG-GAGCa-GU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 26390 0.71 0.466126
Target:  5'- gUCGCGGaUCgucugCGggUUCUgGUCGAGCu -3'
miRNA:   3'- -GGCGCC-GGaa---GCuuAGGAgCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 26596 0.66 0.781374
Target:  5'- gCCGCGGCCUuguacuUCaugcCCUgGUCcuGCa -3'
miRNA:   3'- -GGCGCCGGA------AGcuuaGGAgCAGuuCG- -5'
28010 3' -53.2 NC_005887.1 + 27376 0.73 0.397641
Target:  5'- gCGCGGCCUgcgCGGcgUaggCGUCGAGUu -3'
miRNA:   3'- gGCGCCGGAa--GCUuaGga-GCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 28772 0.73 0.370333
Target:  5'- aCGCGGCCUccuUCGcGUCgUCGgccugcUCGGGCg -3'
miRNA:   3'- gGCGCCGGA---AGCuUAGgAGC------AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 29112 0.66 0.760784
Target:  5'- aCgGCGGUCagCGucuucucugCCUCGUCuGGCg -3'
miRNA:   3'- -GgCGCCGGaaGCuua------GGAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 29798 0.69 0.633598
Target:  5'- gCCgGCGGCCgUCGAcgCCaCGUCcuugaaguugucggcGAGCu -3'
miRNA:   3'- -GG-CGCCGGaAGCUuaGGaGCAG---------------UUCG- -5'
28010 3' -53.2 NC_005887.1 + 29925 0.67 0.728901
Target:  5'- gCCGCgGGCCUcgcgccgaucUCGGGaUCgacggUGUCGAGCg -3'
miRNA:   3'- -GGCG-CCGGA----------AGCUUaGGa----GCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 30224 0.75 0.296361
Target:  5'- gUCGCGGCCUUCGA-UgUUCGaCAGGUc -3'
miRNA:   3'- -GGCGCCGGAAGCUuAgGAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 30644 0.72 0.455962
Target:  5'- gCGCGGCgaagcgauCUUgCGAcgCCugaUCGUCGAGCg -3'
miRNA:   3'- gGCGCCG--------GAA-GCUuaGG---AGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 30736 0.67 0.739646
Target:  5'- gCGUGGCCUUCGcgacuUCgC-CGUCGgucAGCu -3'
miRNA:   3'- gGCGCCGGAAGCuu---AG-GaGCAGU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 30816 0.67 0.750277
Target:  5'- aCCGCGGCC-UCGGccaGUUCgaCGUCcaucuGCa -3'
miRNA:   3'- -GGCGCCGGaAGCU---UAGGa-GCAGuu---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.