miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 3' -53.2 NC_005887.1 + 26144 0.75 0.296361
Target:  5'- uUCGCGGCgcUCGAcgacGUCCUCGUCGAu- -3'
miRNA:   3'- -GGCGCCGgaAGCU----UAGGAGCAGUUcg -5'
28010 3' -53.2 NC_005887.1 + 26390 0.71 0.466126
Target:  5'- gUCGCGGaUCgucugCGggUUCUgGUCGAGCu -3'
miRNA:   3'- -GGCGCC-GGaa---GCuuAGGAgCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 2947 0.71 0.466126
Target:  5'- gCCGCGGCaccgccgCGAccAUCCUCG-CcGGCg -3'
miRNA:   3'- -GGCGCCGgaa----GCU--UAGGAGCaGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 17415 0.7 0.540229
Target:  5'- uCgGCGGCauggCGAAgaacaucgCgCUCGUCGAGCg -3'
miRNA:   3'- -GgCGCCGgaa-GCUUa-------G-GAGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 22870 0.68 0.673913
Target:  5'- gCCGcCGGCCgcuaUCaGAUCCUCG-CGcGCu -3'
miRNA:   3'- -GGC-GCCGGa---AGcUUAGGAGCaGUuCG- -5'
28010 3' -53.2 NC_005887.1 + 3717 0.68 0.673913
Target:  5'- gCCGCGcGCCgacCGcGAUCCgCG-CAAGCu -3'
miRNA:   3'- -GGCGC-CGGaa-GC-UUAGGaGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 24682 0.68 0.667216
Target:  5'- gCCGCGGCCggC--AUCCUCGaccgccuggaugauaUCcAGCg -3'
miRNA:   3'- -GGCGCCGGaaGcuUAGGAGC---------------AGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 33424 0.68 0.651548
Target:  5'- aCCGCGaCCgagcaGAcgAUCCUCGaCGAGCu -3'
miRNA:   3'- -GGCGCcGGaag--CU--UAGGAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 35407 0.69 0.606678
Target:  5'- cCCGCgcacGGCCUUCGcccacgagucGAUCag-GUCGAGCg -3'
miRNA:   3'- -GGCG----CCGGAAGC----------UUAGgagCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 33623 0.7 0.540229
Target:  5'- gCGUGGUCUUCGAAcuUCC-CGU--AGCg -3'
miRNA:   3'- gGCGCCGGAAGCUU--AGGaGCAguUCG- -5'
28010 3' -53.2 NC_005887.1 + 8606 0.67 0.750278
Target:  5'- cUCGUgaaGGCCggCGcgcuGAUCCUCGccgcgaUCGAGCa -3'
miRNA:   3'- -GGCG---CCGGaaGC----UUAGGAGC------AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 1597 0.67 0.750278
Target:  5'- gCGCGGCgCgccaacggCGAucgCCUCGacgCGGGCg -3'
miRNA:   3'- gGCGCCG-Gaa------GCUua-GGAGCa--GUUCG- -5'
28010 3' -53.2 NC_005887.1 + 29112 0.66 0.760784
Target:  5'- aCgGCGGUCagCGucuucucugCCUCGUCuGGCg -3'
miRNA:   3'- -GgCGCCGGaaGCuua------GGAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 5971 0.66 0.764949
Target:  5'- aUCGCGGCCgucgUCGAGaucaggagcacgcgcUCCugucccccUCGUC-GGCc -3'
miRNA:   3'- -GGCGCCGGa---AGCUU---------------AGG--------AGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 23955 0.66 0.771154
Target:  5'- gCCGCGGCgUaggccaUCGggUUCg---CGAGCg -3'
miRNA:   3'- -GGCGCCGgA------AGCuuAGGagcaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 8223 0.66 0.781374
Target:  5'- uCUGUGGCgaaaUCGaAAUCCUCuGcCGAGCg -3'
miRNA:   3'- -GGCGCCGga--AGC-UUAGGAG-CaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 26596 0.66 0.781374
Target:  5'- gCCGCGGCCUuguacuUCaugcCCUgGUCcuGCa -3'
miRNA:   3'- -GGCGCCGGA------AGcuuaGGAgCAGuuCG- -5'
28010 3' -53.2 NC_005887.1 + 40175 0.66 0.781374
Target:  5'- aCCGCGGCCggCGucaggCCgaaGUCcaugccgauccaGAGCg -3'
miRNA:   3'- -GGCGCCGGaaGCuua--GGag-CAG------------UUCG- -5'
28010 3' -53.2 NC_005887.1 + 26165 0.66 0.798373
Target:  5'- gCGCGGCCUcuUCGcgcagguucgccucGAUCgCUCGcgCAcucGGCg -3'
miRNA:   3'- gGCGCCGGA--AGC--------------UUAG-GAGCa-GU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 34349 1.15 0.000562
Target:  5'- gCCGCGGCCUUCGAAUCCUCGUCAAGCg -3'
miRNA:   3'- -GGCGCCGGAAGCUUAGGAGCAGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.