miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28010 3' -53.2 NC_005887.1 + 2975 0.66 0.80132
Target:  5'- gCCGcCGGCC-UCGGuuacugGUCCUUGaUGAGUg -3'
miRNA:   3'- -GGC-GCCGGaAGCU------UAGGAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 13665 0.68 0.68504
Target:  5'- uUCGCGGgCgugaucgCGggUUgUCGUCuGGCg -3'
miRNA:   3'- -GGCGCCgGaa-----GCuuAGgAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 15283 0.68 0.651548
Target:  5'- gCGCGGCac-CGAGUUCgugaagaaGUCGGGCg -3'
miRNA:   3'- gGCGCCGgaaGCUUAGGag------CAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 34349 1.15 0.000562
Target:  5'- gCCGCGGCCUUCGAAUCCUCGUCAAGCg -3'
miRNA:   3'- -GGCGCCGGAAGCUUAGGAGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 8223 0.66 0.781374
Target:  5'- uCUGUGGCgaaaUCGaAAUCCUCuGcCGAGCg -3'
miRNA:   3'- -GGCGCCGga--AGC-UUAGGAG-CaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 23955 0.66 0.771154
Target:  5'- gCCGCGGCgUaggccaUCGggUUCg---CGAGCg -3'
miRNA:   3'- -GGCGCCGgA------AGCuuAGGagcaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 29112 0.66 0.760784
Target:  5'- aCgGCGGUCagCGucuucucugCCUCGUCuGGCg -3'
miRNA:   3'- -GgCGCCGGaaGCuua------GGAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 1597 0.67 0.750278
Target:  5'- gCGCGGCgCgccaacggCGAucgCCUCGacgCGGGCg -3'
miRNA:   3'- gGCGCCG-Gaa------GCUua-GGAGCa--GUUCG- -5'
28010 3' -53.2 NC_005887.1 + 37729 0.67 0.728902
Target:  5'- gCCgGCGGCCacCGGcgCCgCGgCGAGCa -3'
miRNA:   3'- -GG-CGCCGGaaGCUuaGGaGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 13860 0.68 0.68504
Target:  5'- cCCGcCGGCg--CGcGUCUacuUCGUCGAGCu -3'
miRNA:   3'- -GGC-GCCGgaaGCuUAGG---AGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 34955 0.67 0.718057
Target:  5'- aCCGUGGCgaUCG--UCgUCGgCGAGCu -3'
miRNA:   3'- -GGCGCCGgaAGCuuAGgAGCaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 41226 0.67 0.74922
Target:  5'- gCGCGGCUucgucagUUCGAGcUUgUCGUUcAGCa -3'
miRNA:   3'- gGCGCCGG-------AAGCUU-AGgAGCAGuUCG- -5'
28010 3' -53.2 NC_005887.1 + 26165 0.66 0.798373
Target:  5'- gCGCGGCCUcuUCGcgcagguucgccucGAUCgCUCGcgCAcucGGCg -3'
miRNA:   3'- gGCGCCGGA--AGC--------------UUAG-GAGCa-GU---UCG- -5'
28010 3' -53.2 NC_005887.1 + 1697 0.67 0.707124
Target:  5'- gUGCGGCCggugaUCGGcgCgcgCUCGUCAGuGCc -3'
miRNA:   3'- gGCGCCGGa----AGCUuaG---GAGCAGUU-CG- -5'
28010 3' -53.2 NC_005887.1 + 40175 0.66 0.781374
Target:  5'- aCCGCGGCCggCGucaggCCgaaGUCcaugccgauccaGAGCg -3'
miRNA:   3'- -GGCGCCGGaaGCuua--GGag-CAG------------UUCG- -5'
28010 3' -53.2 NC_005887.1 + 8606 0.67 0.750278
Target:  5'- cUCGUgaaGGCCggCGcgcuGAUCCUCGccgcgaUCGAGCa -3'
miRNA:   3'- -GGCG---CCGGaaGC----UUAGGAGC------AGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 39121 0.68 0.696114
Target:  5'- gCGCGGUCgaaUCGAacAUCUUCuG-CGAGCg -3'
miRNA:   3'- gGCGCCGGa--AGCU--UAGGAG-CaGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 2029 0.68 0.673913
Target:  5'- uCgGCGGCgaacguCUUCGGcaUgUCGUCGAGCu -3'
miRNA:   3'- -GgCGCCG------GAAGCUuaGgAGCAGUUCG- -5'
28010 3' -53.2 NC_005887.1 + 26596 0.66 0.781374
Target:  5'- gCCGCGGCCUuguacuUCaugcCCUgGUCcuGCa -3'
miRNA:   3'- -GGCGCCGGA------AGcuuaGGAgCAGuuCG- -5'
28010 3' -53.2 NC_005887.1 + 5971 0.66 0.764949
Target:  5'- aUCGCGGCCgucgUCGAGaucaggagcacgcgcUCCugucccccUCGUC-GGCc -3'
miRNA:   3'- -GGCGCCGGa---AGCUU---------------AGG--------AGCAGuUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.