miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 33233 0.71 0.303661
Target:  5'- -cCGAUGCGcuUGCgACCaGAGUAACGGCGc -3'
miRNA:   3'- uaGCUGUGC--ACG-UGG-CUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8490 0.7 0.335383
Target:  5'- -aCGACACGUG-GCuCGAGUcgcguAACGGCGu -3'
miRNA:   3'- uaGCUGUGCACgUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14699 0.7 0.319226
Target:  5'- cUCGuCGCGgcggGCggGCCGGGCG-CGGCGa -3'
miRNA:   3'- uAGCuGUGCa---CG--UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11316 0.7 0.335383
Target:  5'- cUCGGCAgCGaGCGCCGcaaccGCGACGGCc -3'
miRNA:   3'- uAGCUGU-GCaCGUGGCu----CGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 26340 0.7 0.319226
Target:  5'- -cCGAUACGU-CACCG-GCucGCGGCGg -3'
miRNA:   3'- uaGCUGUGCAcGUGGCuCGu-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 20843 0.7 0.327231
Target:  5'- -cCGGCGuCGuUGCGCCGAuuGcCGGCGGCGa -3'
miRNA:   3'- uaGCUGU-GC-ACGUGGCU--C-GUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 5411 0.7 0.352129
Target:  5'- -cCGGCGgGcgGCGCCGcAGCGAcCGGCGc -3'
miRNA:   3'- uaGCUGUgCa-CGUGGC-UCGUU-GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 39424 0.69 0.396528
Target:  5'- -gCGGCGCuUGCGCagcuuGGCGGCGGCGu -3'
miRNA:   3'- uaGCUGUGcACGUGgc---UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 30339 0.69 0.405831
Target:  5'- -gCGGCguGCGUGCGCCGGaugucuGCAACgugGGCGc -3'
miRNA:   3'- uaGCUG--UGCACGUGGCU------CGUUG---CCGC- -5'
28011 5' -56.6 NC_005887.1 + 33869 0.69 0.405831
Target:  5'- cUCGAgcCACGUGUcgucGCCGAGCGGuuGCGc -3'
miRNA:   3'- uAGCU--GUGCACG----UGGCUCGUUgcCGC- -5'
28011 5' -56.6 NC_005887.1 + 41577 0.69 0.403959
Target:  5'- cUCGuuuuuccacugauACGCGUGC-CCGAuaccccaGCAAUGGCGg -3'
miRNA:   3'- uAGC-------------UGUGCACGuGGCU-------CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16941 0.69 0.37834
Target:  5'- -gCGAUGCGUGagcgcuucaACCGcGCGGCGGCa -3'
miRNA:   3'- uaGCUGUGCACg--------UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 22708 0.69 0.37834
Target:  5'- cUCGACACGauCGCCguGAGCGAgauCGGCGg -3'
miRNA:   3'- uAGCUGUGCacGUGG--CUCGUU---GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 28335 0.68 0.415269
Target:  5'- uGUCGGCGucUGCGCCG-GCG-CGGCa -3'
miRNA:   3'- -UAGCUGUgcACGUGGCuCGUuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 31250 0.68 0.412423
Target:  5'- uUCG-CGCGcaccagccgaUGCGCCacgcggaaucguuuGAGCAGCGGCGc -3'
miRNA:   3'- uAGCuGUGC----------ACGUGG--------------CUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 15264 0.68 0.44834
Target:  5'- uGUCGaaccagcgcagcaaGCGCG-GCACCGAGUucgugaagaagucgGGCGGCa -3'
miRNA:   3'- -UAGC--------------UGUGCaCGUGGCUCG--------------UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 26752 0.68 0.454327
Target:  5'- -gCGACGCccGUGCGCUGcgucucAGCuuCGGCGa -3'
miRNA:   3'- uaGCUGUG--CACGUGGC------UCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2238 0.68 0.454327
Target:  5'- gGUCGGaaguCGUcGCGaCGAGCAugGGCGc -3'
miRNA:   3'- -UAGCUgu--GCA-CGUgGCUCGUugCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40763 0.68 0.464399
Target:  5'- cGUUGGCGCGccGCgcgccGCCGAGC--CGGCGg -3'
miRNA:   3'- -UAGCUGUGCa-CG-----UGGCUCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27337 0.68 0.464399
Target:  5'- cGUCGAC---UGCGCCacgcGCAGCGGCGc -3'
miRNA:   3'- -UAGCUGugcACGUGGcu--CGUUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.