miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 9392 0.66 0.574975
Target:  5'- gAUCGGCGCGgaaugggaauaccaGCACuCGGGCuauggAACGGUGc -3'
miRNA:   3'- -UAGCUGUGCa-------------CGUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11086 0.67 0.505794
Target:  5'- gAUCGACGCGgccgacgaGUACUGguGGCAgaACGGUGg -3'
miRNA:   3'- -UAGCUGUGCa-------CGUGGC--UCGU--UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11105 0.73 0.20749
Target:  5'- cAUCGGCugGUGCGCgCGAaGCuggccgaggcgccguGGCGGCGc -3'
miRNA:   3'- -UAGCUGugCACGUG-GCU-CG---------------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11129 0.68 0.434544
Target:  5'- uUCGAuCGCGUcGUGCUGaAGCAcGCGGCGc -3'
miRNA:   3'- uAGCU-GUGCA-CGUGGC-UCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11316 0.7 0.335383
Target:  5'- cUCGGCAgCGaGCGCCGcaaccGCGACGGCc -3'
miRNA:   3'- uAGCUGU-GCaCGUGGCu----CGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 11588 0.67 0.484886
Target:  5'- cUCGcCGCGcGCACgguCGAGCugaccGACGGCGa -3'
miRNA:   3'- uAGCuGUGCaCGUG---GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11890 0.66 0.570572
Target:  5'- uUCGGCA---GCGCCG-GCAacuucACGGCGg -3'
miRNA:   3'- uAGCUGUgcaCGUGGCuCGU-----UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 12630 0.76 0.135709
Target:  5'- -gCGGCGCGUGaucCugCGAcGCGACGGCGa -3'
miRNA:   3'- uaGCUGUGCAC---GugGCU-CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 13773 0.66 0.581593
Target:  5'- cGUCGAcCGCGUccgcGCAgCGGGCGGCGaCGc -3'
miRNA:   3'- -UAGCU-GUGCA----CGUgGCUCGUUGCcGC- -5'
28011 5' -56.6 NC_005887.1 + 14140 0.66 0.537848
Target:  5'- gAUCGA--UGUGC-CCGAGCcGACGGUc -3'
miRNA:   3'- -UAGCUguGCACGuGGCUCG-UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 14365 0.75 0.160475
Target:  5'- -aCGACGCGauucgGC-CCGAGcCGGCGGCGg -3'
miRNA:   3'- uaGCUGUGCa----CGuGGCUC-GUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14670 0.66 0.574975
Target:  5'- -aCGGCACGUGaugcagacgaucaaGCCGcGCGcGCGGCa -3'
miRNA:   3'- uaGCUGUGCACg-------------UGGCuCGU-UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 14699 0.7 0.319226
Target:  5'- cUCGuCGCGgcggGCggGCCGGGCG-CGGCGa -3'
miRNA:   3'- uAGCuGUGCa---CG--UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14906 0.67 0.505794
Target:  5'- cUCGA-ACGUGUggGCCG-GCAugGGCc -3'
miRNA:   3'- uAGCUgUGCACG--UGGCuCGUugCCGc -5'
28011 5' -56.6 NC_005887.1 + 15264 0.68 0.44834
Target:  5'- uGUCGaaccagcgcagcaaGCGCG-GCACCGAGUucgugaagaagucgGGCGGCa -3'
miRNA:   3'- -UAGC--------------UGUGCaCGUGGCUCG--------------UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 15384 0.67 0.474587
Target:  5'- gGUCGACGCcgcgcugaucGCGCgCGGGCAGCGGa- -3'
miRNA:   3'- -UAGCUGUGca--------CGUG-GCUCGUUGCCgc -5'
28011 5' -56.6 NC_005887.1 + 16442 0.74 0.173853
Target:  5'- gAUCGAgaacCGCGUGCGCgCGGGCAugcgcucgaccgcGCGGCa -3'
miRNA:   3'- -UAGCU----GUGCACGUG-GCUCGU-------------UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 16814 0.66 0.537848
Target:  5'- -aCGA-ACGcGCACCGcuCGGCGGCGa -3'
miRNA:   3'- uaGCUgUGCaCGUGGCucGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16941 0.69 0.37834
Target:  5'- -gCGAUGCGUGagcgcuucaACCGcGCGGCGGCa -3'
miRNA:   3'- uaGCUGUGCACg--------UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 17297 0.66 0.581593
Target:  5'- uUCGGCcaGCG-GCACUGcGGCAugGGUu -3'
miRNA:   3'- uAGCUG--UGCaCGUGGC-UCGUugCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.