miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 257 0.67 0.49529
Target:  5'- cGUCGACGCGgcaucGCGCCccacGCGACaGCGc -3'
miRNA:   3'- -UAGCUGUGCa----CGUGGcu--CGUUGcCGC- -5'
28011 5' -56.6 NC_005887.1 + 794 0.66 0.569472
Target:  5'- cUCGGCgcuggcugacuucGCGUGCgcGCCGAGCGccucGCGGa- -3'
miRNA:   3'- uAGCUG-------------UGCACG--UGGCUCGU----UGCCgc -5'
28011 5' -56.6 NC_005887.1 + 899 0.66 0.558508
Target:  5'- cUCG-CGCGgcGUGCCGAGCAGCgcauagcccacgaGGCGc -3'
miRNA:   3'- uAGCuGUGCa-CGUGGCUCGUUG-------------CCGC- -5'
28011 5' -56.6 NC_005887.1 + 1793 0.67 0.515329
Target:  5'- cGUCGGCcgcuacccgaaggACGUGcCGCCGAccuGguACGGCa -3'
miRNA:   3'- -UAGCUG-------------UGCAC-GUGGCU---CguUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 1950 0.67 0.483851
Target:  5'- -cCGGCACGUcggccGUGCCGGGCAucacgauuuccucGCGcGCGa -3'
miRNA:   3'- uaGCUGUGCA-----CGUGGCUCGU-------------UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 2238 0.68 0.454327
Target:  5'- gGUCGGaaguCGUcGCGaCGAGCAugGGCGc -3'
miRNA:   3'- -UAGCUgu--GCA-CGUgGCUCGUugCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2467 0.67 0.484886
Target:  5'- cGUCGACGag-GCGCUGAcGCGgaucaucgACGGCGa -3'
miRNA:   3'- -UAGCUGUgcaCGUGGCU-CGU--------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 4495 0.68 0.431619
Target:  5'- -aCGGCGCGcGCAUCGcGCGucugcucgccgacuACGGCGg -3'
miRNA:   3'- uaGCUGUGCaCGUGGCuCGU--------------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 5411 0.7 0.352129
Target:  5'- -cCGGCGgGcgGCGCCGcAGCGAcCGGCGc -3'
miRNA:   3'- uaGCUGUgCa-CGUGGC-UCGUU-GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 6182 0.67 0.484886
Target:  5'- gGUCGGCACGgugacGCGCCGcGaCGAggaaacCGGCGa -3'
miRNA:   3'- -UAGCUGUGCa----CGUGGCuC-GUU------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 6287 0.66 0.570572
Target:  5'- cAUCGACgGCGUGCG-CGAGCGcgucgaGGCc -3'
miRNA:   3'- -UAGCUG-UGCACGUgGCUCGUug----CCGc -5'
28011 5' -56.6 NC_005887.1 + 8404 0.66 0.581593
Target:  5'- -aCGcgACGUGCucGCCGAGCGccguCGGCa -3'
miRNA:   3'- uaGCugUGCACG--UGGCUCGUu---GCCGc -5'
28011 5' -56.6 NC_005887.1 + 8407 0.72 0.26732
Target:  5'- --aGGCGCGUGgGCCGAGCAcgaccaGGCu -3'
miRNA:   3'- uagCUGUGCACgUGGCUCGUug----CCGc -5'
28011 5' -56.6 NC_005887.1 + 8434 0.67 0.516393
Target:  5'- gGUCGACGuCGaagGCuucacucCCGAGCAcgacgaccaauACGGCGa -3'
miRNA:   3'- -UAGCUGU-GCa--CGu------GGCUCGU-----------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8490 0.7 0.335383
Target:  5'- -aCGACACGUG-GCuCGAGUcgcguAACGGCGu -3'
miRNA:   3'- uaGCUGUGCACgUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8954 0.66 0.559602
Target:  5'- -cCGACACGaUGUACCu-GUuucACGGCGg -3'
miRNA:   3'- uaGCUGUGC-ACGUGGcuCGu--UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8985 0.68 0.454327
Target:  5'- -cCGGCGCGUGCACauccgcugcaguCGGGagaagugcaAACGGCGc -3'
miRNA:   3'- uaGCUGUGCACGUG------------GCUCg--------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9059 0.68 0.454327
Target:  5'- -aCGuACGCGgauggaagUGCGCCG-GCuGCGGCGg -3'
miRNA:   3'- uaGC-UGUGC--------ACGUGGCuCGuUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9209 0.75 0.169131
Target:  5'- -gCGGCACGgucgGCugcuucuACCGAcGCAACGGCGa -3'
miRNA:   3'- uaGCUGUGCa---CG-------UGGCU-CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9339 0.74 0.178692
Target:  5'- aGUCGAUgggACG-GCACCGGGCAGgacgaauCGGCGa -3'
miRNA:   3'- -UAGCUG---UGCaCGUGGCUCGUU-------GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.