miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 21254 0.78 0.093684
Target:  5'- cAUCGACccuCGgggGCACCGcGGCGGCGGCGu -3'
miRNA:   3'- -UAGCUGu--GCa--CGUGGC-UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40231 0.68 0.444373
Target:  5'- --aGAacaGCGU--GCCGAGCGACGGCu -3'
miRNA:   3'- uagCUg--UGCAcgUGGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 40924 0.68 0.434544
Target:  5'- -cCG-CGCGcGCACCGAGUu-CGGCa -3'
miRNA:   3'- uaGCuGUGCaCGUGGCUCGuuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 4495 0.68 0.431619
Target:  5'- -aCGGCGCGcGCAUCGcGCGucugcucgccgacuACGGCGg -3'
miRNA:   3'- uaGCUGUGCaCGUGGCuCGU--------------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 28335 0.68 0.415269
Target:  5'- uGUCGGCGucUGCGCCG-GCG-CGGCa -3'
miRNA:   3'- -UAGCUGUgcACGUGGCuCGUuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 22708 0.69 0.37834
Target:  5'- cUCGACACGauCGCCguGAGCGAgauCGGCGg -3'
miRNA:   3'- uAGCUGUGCacGUGG--CUCGUU---GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16941 0.69 0.37834
Target:  5'- -gCGAUGCGUGagcgcuucaACCGcGCGGCGGCa -3'
miRNA:   3'- uaGCUGUGCACg--------UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 5411 0.7 0.352129
Target:  5'- -cCGGCGgGcgGCGCCGcAGCGAcCGGCGc -3'
miRNA:   3'- uaGCUGUgCa-CGUGGC-UCGUU-GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11316 0.7 0.335383
Target:  5'- cUCGGCAgCGaGCGCCGcaaccGCGACGGCc -3'
miRNA:   3'- uAGCUGU-GCaCGUGGCu----CGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 8490 0.7 0.335383
Target:  5'- -aCGACACGUG-GCuCGAGUcgcguAACGGCGu -3'
miRNA:   3'- uaGCUGUGCACgUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14699 0.7 0.319226
Target:  5'- cUCGuCGCGgcggGCggGCCGGGCG-CGGCGa -3'
miRNA:   3'- uAGCuGUGCa---CG--UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40161 0.72 0.26732
Target:  5'- cUCGcCGCGUGUgaGCUGcGCGACGGCa -3'
miRNA:   3'- uAGCuGUGCACG--UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 8407 0.72 0.26732
Target:  5'- --aGGCGCGUGgGCCGAGCAcgaccaGGCu -3'
miRNA:   3'- uagCUGUGCACgUGGCUCGUug----CCGc -5'
28011 5' -56.6 NC_005887.1 + 23232 0.73 0.222451
Target:  5'- -cCGACg---GCACgCGAGCGGCGGCGg -3'
miRNA:   3'- uaGCUGugcaCGUG-GCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11105 0.73 0.20749
Target:  5'- cAUCGGCugGUGCGCgCGAaGCuggccgaggcgccguGGCGGCGc -3'
miRNA:   3'- -UAGCUGugCACGUG-GCU-CG---------------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9339 0.74 0.178692
Target:  5'- aGUCGAUgggACG-GCACCGGGCAGgacgaauCGGCGa -3'
miRNA:   3'- -UAGCUG---UGCaCGUGGCUCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16442 0.74 0.173853
Target:  5'- gAUCGAgaacCGCGUGCGCgCGGGCAugcgcucgaccgcGCGGCa -3'
miRNA:   3'- -UAGCU----GUGCACGUG-GCUCGU-------------UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 24944 0.75 0.151797
Target:  5'- -gCGACGCGUGCGCgCGGGCcgccuuGCGcGCGg -3'
miRNA:   3'- uaGCUGUGCACGUG-GCUCGu-----UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 36514 0.78 0.105097
Target:  5'- gGUCGAC-CGcaGCAUCGGGCGGCGGCa -3'
miRNA:   3'- -UAGCUGuGCa-CGUGGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 35560 0.79 0.085657
Target:  5'- cUCGACAUGUGCggcgagcGCCGGGCAcACGGCc -3'
miRNA:   3'- uAGCUGUGCACG-------UGGCUCGU-UGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.