Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 13773 | 0.66 | 0.581593 |
Target: 5'- cGUCGAcCGCGUccgcGCAgCGGGCGGCGaCGc -3' miRNA: 3'- -UAGCU-GUGCA----CGUgGCUCGUUGCcGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 257 | 0.67 | 0.49529 |
Target: 5'- cGUCGACGCGgcaucGCGCCccacGCGACaGCGc -3' miRNA: 3'- -UAGCUGUGCa----CGUGGcu--CGUUGcCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 11588 | 0.67 | 0.484886 |
Target: 5'- cUCGcCGCGcGCACgguCGAGCugaccGACGGCGa -3' miRNA: 3'- uAGCuGUGCaCGUG---GCUCG-----UUGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 33734 | 1.07 | 0.000684 |
Target: 5'- gAUCGACACGUGCACCGAGCAACGGCGa -3' miRNA: 3'- -UAGCUGUGCACGUGGCUCGUUGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 6287 | 0.66 | 0.570572 |
Target: 5'- cAUCGACgGCGUGCG-CGAGCGcgucgaGGCc -3' miRNA: 3'- -UAGCUG-UGCACGUgGCUCGUug----CCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 32142 | 0.66 | 0.570572 |
Target: 5'- -cCGGCGCGgGCAUCGAcGCGAC-GCa -3' miRNA: 3'- uaGCUGUGCaCGUGGCU-CGUUGcCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 32232 | 0.66 | 0.559602 |
Target: 5'- cGUCG-UACGUGCAgCCGAuCAGCuGGCc -3' miRNA: 3'- -UAGCuGUGCACGU-GGCUcGUUG-CCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 19069 | 0.66 | 0.559602 |
Target: 5'- uUCGGCGCGgGCugCG-GCAACcGCc -3' miRNA: 3'- uAGCUGUGCaCGugGCuCGUUGcCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 34943 | 0.66 | 0.526007 |
Target: 5'- -gCGGCGgGUGCgACCGuGGCGAucgucguCGGCGa -3' miRNA: 3'- uaGCUGUgCACG-UGGC-UCGUU-------GCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 14906 | 0.67 | 0.505794 |
Target: 5'- cUCGA-ACGUGUggGCCG-GCAugGGCc -3' miRNA: 3'- uAGCUgUGCACG--UGGCuCGUugCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 21605 | 0.67 | 0.516393 |
Target: 5'- -cCGGCGCGUGCAUUGGucacggaaaaauGCugGAUGGCGu -3' miRNA: 3'- uaGCUGUGCACGUGGCU------------CG--UUGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 16814 | 0.66 | 0.537848 |
Target: 5'- -aCGA-ACGcGCACCGcuCGGCGGCGa -3' miRNA: 3'- uaGCUgUGCaCGUGGCucGUUGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 17297 | 0.66 | 0.581593 |
Target: 5'- uUCGGCcaGCG-GCACUGcGGCAugGGUu -3' miRNA: 3'- uAGCUG--UGCaCGUGGC-UCGUugCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 26453 | 0.67 | 0.515329 |
Target: 5'- gGUCGGCcagcugcGCGUcgagcGCACCGAGCuGCuGGUGc -3' miRNA: 3'- -UAGCUG-------UGCA-----CGUGGCUCGuUG-CCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 8404 | 0.66 | 0.581593 |
Target: 5'- -aCGcgACGUGCucGCCGAGCGccguCGGCa -3' miRNA: 3'- uaGCugUGCACG--UGGCUCGUu---GCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 899 | 0.66 | 0.558508 |
Target: 5'- cUCG-CGCGgcGUGCCGAGCAGCgcauagcccacgaGGCGc -3' miRNA: 3'- uAGCuGUGCa-CGUGGCUCGUUG-------------CCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 11086 | 0.67 | 0.505794 |
Target: 5'- gAUCGACGCGgccgacgaGUACUGguGGCAgaACGGUGg -3' miRNA: 3'- -UAGCUGUGCa-------CGUGGC--UCGU--UGCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 6182 | 0.67 | 0.484886 |
Target: 5'- gGUCGGCACGgugacGCGCCGcGaCGAggaaacCGGCGa -3' miRNA: 3'- -UAGCUGUGCa----CGUGGCuC-GUU------GCCGC- -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 14670 | 0.66 | 0.574975 |
Target: 5'- -aCGGCACGUGaugcagacgaucaaGCCGcGCGcGCGGCa -3' miRNA: 3'- uaGCUGUGCACg-------------UGGCuCGU-UGCCGc -5' |
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28011 | 5' | -56.6 | NC_005887.1 | + | 794 | 0.66 | 0.569472 |
Target: 5'- cUCGGCgcuggcugacuucGCGUGCgcGCCGAGCGccucGCGGa- -3' miRNA: 3'- uAGCUG-------------UGCACG--UGGCUCGU----UGCCgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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