miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 8985 0.68 0.454327
Target:  5'- -cCGGCGCGUGCACauccgcugcaguCGGGagaagugcaAACGGCGc -3'
miRNA:   3'- uaGCUGUGCACGUG------------GCUCg--------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9059 0.68 0.454327
Target:  5'- -aCGuACGCGgauggaagUGCGCCG-GCuGCGGCGg -3'
miRNA:   3'- uaGC-UGUGC--------ACGUGGCuCGuUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 26453 0.67 0.515329
Target:  5'- gGUCGGCcagcugcGCGUcgagcGCACCGAGCuGCuGGUGc -3'
miRNA:   3'- -UAGCUG-------UGCA-----CGUGGCUCGuUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 32232 0.66 0.559602
Target:  5'- cGUCG-UACGUGCAgCCGAuCAGCuGGCc -3'
miRNA:   3'- -UAGCuGUGCACGU-GGCUcGUUG-CCGc -5'
28011 5' -56.6 NC_005887.1 + 41577 0.69 0.403959
Target:  5'- cUCGuuuuuccacugauACGCGUGC-CCGAuaccccaGCAAUGGCGg -3'
miRNA:   3'- uAGC-------------UGUGCACGuGGCU-------CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40554 0.68 0.434544
Target:  5'- -gCGGCACGUcCuuCGGGUAGCGGCc -3'
miRNA:   3'- uaGCUGUGCAcGugGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 11588 0.67 0.484886
Target:  5'- cUCGcCGCGcGCACgguCGAGCugaccGACGGCGa -3'
miRNA:   3'- uAGCuGUGCaCGUG---GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 794 0.66 0.569472
Target:  5'- cUCGGCgcuggcugacuucGCGUGCgcGCCGAGCGccucGCGGa- -3'
miRNA:   3'- uAGCUG-------------UGCACG--UGGCUCGU----UGCCgc -5'
28011 5' -56.6 NC_005887.1 + 27406 0.68 0.444373
Target:  5'- -gCGGCGCGUcGUACgGcAGCGcGCGGCGu -3'
miRNA:   3'- uaGCUGUGCA-CGUGgC-UCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 32142 0.66 0.570572
Target:  5'- -cCGGCGCGgGCAUCGAcGCGAC-GCa -3'
miRNA:   3'- uaGCUGUGCaCGUGGCU-CGUUGcCGc -5'
28011 5' -56.6 NC_005887.1 + 1950 0.67 0.483851
Target:  5'- -cCGGCACGUcggccGUGCCGGGCAucacgauuuccucGCGcGCGa -3'
miRNA:   3'- uaGCUGUGCA-----CGUGGCUCGU-------------UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 26752 0.68 0.454327
Target:  5'- -gCGACGCccGUGCGCUGcgucucAGCuuCGGCGa -3'
miRNA:   3'- uaGCUGUG--CACGUGGC------UCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 6182 0.67 0.484886
Target:  5'- gGUCGGCACGgugacGCGCCGcGaCGAggaaacCGGCGa -3'
miRNA:   3'- -UAGCUGUGCa----CGUGGCuC-GUU------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11086 0.67 0.505794
Target:  5'- gAUCGACGCGgccgacgaGUACUGguGGCAgaACGGUGg -3'
miRNA:   3'- -UAGCUGUGCa-------CGUGGC--UCGU--UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 34943 0.66 0.526007
Target:  5'- -gCGGCGgGUGCgACCGuGGCGAucgucguCGGCGa -3'
miRNA:   3'- uaGCUGUgCACG-UGGC-UCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 19069 0.66 0.559602
Target:  5'- uUCGGCGCGgGCugCG-GCAACcGCc -3'
miRNA:   3'- uAGCUGUGCaCGugGCuCGUUGcCGc -5'
28011 5' -56.6 NC_005887.1 + 27436 0.71 0.309041
Target:  5'- cGUCGAUcgcgagugauugcaGCG-GCACCGuAGCAGCuGGCGc -3'
miRNA:   3'- -UAGCUG--------------UGCaCGUGGC-UCGUUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 39424 0.69 0.396528
Target:  5'- -gCGGCGCuUGCGCagcuuGGCGGCGGCGu -3'
miRNA:   3'- uaGCUGUGcACGUGgc---UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 31250 0.68 0.412423
Target:  5'- uUCG-CGCGcaccagccgaUGCGCCacgcggaaucguuuGAGCAGCGGCGc -3'
miRNA:   3'- uAGCuGUGC----------ACGUGG--------------CUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11129 0.68 0.434544
Target:  5'- uUCGAuCGCGUcGUGCUGaAGCAcGCGGCGc -3'
miRNA:   3'- uAGCU-GUGCA-CGUGGC-UCGU-UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.