miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 33734 1.07 0.000684
Target:  5'- gAUCGACACGUGCACCGAGCAACGGCGa -3'
miRNA:   3'- -UAGCUGUGCACGUGGCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 35560 0.79 0.085657
Target:  5'- cUCGACAUGUGCggcgagcGCCGGGCAcACGGCc -3'
miRNA:   3'- uAGCUGUGCACG-------UGGCUCGU-UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 21254 0.78 0.093684
Target:  5'- cAUCGACccuCGgggGCACCGcGGCGGCGGCGu -3'
miRNA:   3'- -UAGCUGu--GCa--CGUGGC-UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 36514 0.78 0.105097
Target:  5'- gGUCGAC-CGcaGCAUCGGGCGGCGGCa -3'
miRNA:   3'- -UAGCUGuGCa-CGUGGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 12630 0.76 0.135709
Target:  5'- -gCGGCGCGUGaucCugCGAcGCGACGGCGa -3'
miRNA:   3'- uaGCUGUGCAC---GugGCU-CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 24944 0.75 0.151797
Target:  5'- -gCGACGCGUGCGCgCGGGCcgccuuGCGcGCGg -3'
miRNA:   3'- uaGCUGUGCACGUG-GCUCGu-----UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 14365 0.75 0.160475
Target:  5'- -aCGACGCGauucgGC-CCGAGcCGGCGGCGg -3'
miRNA:   3'- uaGCUGUGCa----CGuGGCUC-GUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 38106 0.75 0.16498
Target:  5'- --aGACuGCGUGCgGCCGAGCGuCGGCGc -3'
miRNA:   3'- uagCUG-UGCACG-UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9209 0.75 0.169131
Target:  5'- -gCGGCACGgucgGCugcuucuACCGAcGCAACGGCGa -3'
miRNA:   3'- uaGCUGUGCa---CG-------UGGCU-CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16442 0.74 0.173853
Target:  5'- gAUCGAgaacCGCGUGCGCgCGGGCAugcgcucgaccgcGCGGCa -3'
miRNA:   3'- -UAGCU----GUGCACGUG-GCUCGU-------------UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 37182 0.74 0.174332
Target:  5'- cUCGACGCGUGcCAUC-AGCAucaGCGGCGc -3'
miRNA:   3'- uAGCUGUGCAC-GUGGcUCGU---UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9339 0.74 0.178692
Target:  5'- aGUCGAUgggACG-GCACCGGGCAGgacgaauCGGCGa -3'
miRNA:   3'- -UAGCUG---UGCaCGUGGCUCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 18946 0.74 0.179183
Target:  5'- gAUCGACGCGcUGCugCGGcuGCcAGCGGCa -3'
miRNA:   3'- -UAGCUGUGC-ACGugGCU--CG-UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 11105 0.73 0.20749
Target:  5'- cAUCGGCugGUGCGCgCGAaGCuggccgaggcgccguGGCGGCGc -3'
miRNA:   3'- -UAGCUGugCACGUG-GCU-CG---------------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 23232 0.73 0.222451
Target:  5'- -cCGACg---GCACgCGAGCGGCGGCGg -3'
miRNA:   3'- uaGCUGugcaCGUG-GCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27963 0.72 0.260487
Target:  5'- gGUCGuacGCGCGcGCGCCGAGCGGCGa-- -3'
miRNA:   3'- -UAGC---UGUGCaCGUGGCUCGUUGCcgc -5'
28011 5' -56.6 NC_005887.1 + 40161 0.72 0.26732
Target:  5'- cUCGcCGCGUGUgaGCUGcGCGACGGCa -3'
miRNA:   3'- uAGCuGUGCACG--UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 8407 0.72 0.26732
Target:  5'- --aGGCGCGUGgGCCGAGCAcgaccaGGCu -3'
miRNA:   3'- uagCUGUGCACgUGGCUCGUug----CCGc -5'
28011 5' -56.6 NC_005887.1 + 21228 0.72 0.26732
Target:  5'- uUCGugGCGUuggcgaGCACCGuGUuuGCGGCGa -3'
miRNA:   3'- uAGCugUGCA------CGUGGCuCGu-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 33233 0.71 0.303661
Target:  5'- -cCGAUGCGcuUGCgACCaGAGUAACGGCGc -3'
miRNA:   3'- uaGCUGUGC--ACG-UGG-CUCGUUGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.