miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 41577 0.69 0.403959
Target:  5'- cUCGuuuuuccacugauACGCGUGC-CCGAuaccccaGCAAUGGCGg -3'
miRNA:   3'- uAGC-------------UGUGCACGuGGCU-------CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40924 0.68 0.434544
Target:  5'- -cCG-CGCGcGCACCGAGUu-CGGCa -3'
miRNA:   3'- uaGCuGUGCaCGUGGCUCGuuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 40763 0.68 0.464399
Target:  5'- cGUUGGCGCGccGCgcgccGCCGAGC--CGGCGg -3'
miRNA:   3'- -UAGCUGUGCa-CG-----UGGCUCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40554 0.68 0.434544
Target:  5'- -gCGGCACGUcCuuCGGGUAGCGGCc -3'
miRNA:   3'- uaGCUGUGCAcGugGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 40231 0.68 0.444373
Target:  5'- --aGAacaGCGU--GCCGAGCGACGGCu -3'
miRNA:   3'- uagCUg--UGCAcgUGGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 40161 0.72 0.26732
Target:  5'- cUCGcCGCGUGUgaGCUGcGCGACGGCa -3'
miRNA:   3'- uAGCuGUGCACG--UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 39424 0.69 0.396528
Target:  5'- -gCGGCGCuUGCGCagcuuGGCGGCGGCGu -3'
miRNA:   3'- uaGCUGUGcACGUGgc---UCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 38262 0.68 0.415269
Target:  5'- cUCGAUGCcgaucUGCGCCugcuugcccguGAGCAGCGGCu -3'
miRNA:   3'- uAGCUGUGc----ACGUGG-----------CUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 38106 0.75 0.16498
Target:  5'- --aGACuGCGUGCgGCCGAGCGuCGGCGc -3'
miRNA:   3'- uagCUG-UGCACG-UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 37865 0.68 0.444373
Target:  5'- -gCGAUGCGcGCGCCGuucGGCAccuucGCGGCa -3'
miRNA:   3'- uaGCUGUGCaCGUGGC---UCGU-----UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 37182 0.74 0.174332
Target:  5'- cUCGACGCGUGcCAUC-AGCAucaGCGGCGc -3'
miRNA:   3'- uAGCUGUGCAC-GUGGcUCGU---UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 36923 0.68 0.415269
Target:  5'- --gGGCGCGUggucGCGCCGGucGCuGCGGCGc -3'
miRNA:   3'- uagCUGUGCA----CGUGGCU--CGuUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 36514 0.78 0.105097
Target:  5'- gGUCGAC-CGcaGCAUCGGGCGGCGGCa -3'
miRNA:   3'- -UAGCUGuGCa-CGUGGCUCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 35667 0.66 0.570572
Target:  5'- uGUCGACAUacaGCAgCGcGCGAuCGGCGg -3'
miRNA:   3'- -UAGCUGUGca-CGUgGCuCGUU-GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 35560 0.79 0.085657
Target:  5'- cUCGACAUGUGCggcgagcGCCGGGCAcACGGCc -3'
miRNA:   3'- uAGCUGUGCACG-------UGGCUCGU-UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 34943 0.66 0.526007
Target:  5'- -gCGGCGgGUGCgACCGuGGCGAucgucguCGGCGa -3'
miRNA:   3'- uaGCUGUgCACG-UGGC-UCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 33962 0.66 0.581593
Target:  5'- -aCGuCGCGUGCGgcguCCGucAGCAcCGGCGc -3'
miRNA:   3'- uaGCuGUGCACGU----GGC--UCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 33869 0.69 0.405831
Target:  5'- cUCGAgcCACGUGUcgucGCCGAGCGGuuGCGc -3'
miRNA:   3'- uAGCU--GUGCACG----UGGCUCGUUgcCGC- -5'
28011 5' -56.6 NC_005887.1 + 33734 1.07 0.000684
Target:  5'- gAUCGACACGUGCACCGAGCAACGGCGa -3'
miRNA:   3'- -UAGCUGUGCACGUGGCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 33233 0.71 0.303661
Target:  5'- -cCGAUGCGcuUGCgACCaGAGUAACGGCGc -3'
miRNA:   3'- uaGCUGUGC--ACG-UGG-CUCGUUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.