miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 32232 0.66 0.559602
Target:  5'- cGUCG-UACGUGCAgCCGAuCAGCuGGCc -3'
miRNA:   3'- -UAGCuGUGCACGU-GGCUcGUUG-CCGc -5'
28011 5' -56.6 NC_005887.1 + 32142 0.66 0.570572
Target:  5'- -cCGGCGCGgGCAUCGAcGCGAC-GCa -3'
miRNA:   3'- uaGCUGUGCaCGUGGCU-CGUUGcCGc -5'
28011 5' -56.6 NC_005887.1 + 31300 0.66 0.581593
Target:  5'- cUCGAC-CG-GCAUCGGcGCAcCGGUGg -3'
miRNA:   3'- uAGCUGuGCaCGUGGCU-CGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 31250 0.68 0.412423
Target:  5'- uUCG-CGCGcaccagccgaUGCGCCacgcggaaucguuuGAGCAGCGGCGc -3'
miRNA:   3'- uAGCuGUGC----------ACGUGG--------------CUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 30339 0.69 0.405831
Target:  5'- -gCGGCguGCGUGCGCCGGaugucuGCAACgugGGCGc -3'
miRNA:   3'- uaGCUG--UGCACGUGGCU------CGUUG---CCGC- -5'
28011 5' -56.6 NC_005887.1 + 29855 0.67 0.505794
Target:  5'- uGUCGcaggcgaugaACACGUccuGCggcagGCCGAGCGuACGGCGu -3'
miRNA:   3'- -UAGC----------UGUGCA---CG-----UGGCUCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 28397 0.66 0.536768
Target:  5'- uGUCGaucacgcGCACGUcGCAgCCGAGCGcgcGCaGGCGc -3'
miRNA:   3'- -UAGC-------UGUGCA-CGU-GGCUCGU---UG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 28335 0.68 0.415269
Target:  5'- uGUCGGCGucUGCGCCG-GCG-CGGCa -3'
miRNA:   3'- -UAGCUGUgcACGUGGCuCGUuGCCGc -5'
28011 5' -56.6 NC_005887.1 + 28281 0.66 0.570572
Target:  5'- cAUCGGCACGccgaGCGCgCGcAGCGucgUGGCGa -3'
miRNA:   3'- -UAGCUGUGCa---CGUG-GC-UCGUu--GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27963 0.72 0.260487
Target:  5'- gGUCGuacGCGCGcGCGCCGAGCGGCGa-- -3'
miRNA:   3'- -UAGC---UGUGCaCGUGGCUCGUUGCcgc -5'
28011 5' -56.6 NC_005887.1 + 27436 0.71 0.309041
Target:  5'- cGUCGAUcgcgagugauugcaGCG-GCACCGuAGCAGCuGGCGc -3'
miRNA:   3'- -UAGCUG--------------UGCaCGUGGC-UCGUUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 27406 0.68 0.444373
Target:  5'- -gCGGCGCGUcGUACgGcAGCGcGCGGCGu -3'
miRNA:   3'- uaGCUGUGCA-CGUGgC-UCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27337 0.68 0.464399
Target:  5'- cGUCGAC---UGCGCCacgcGCAGCGGCGc -3'
miRNA:   3'- -UAGCUGugcACGUGGcu--CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 26752 0.68 0.454327
Target:  5'- -gCGACGCccGUGCGCUGcgucucAGCuuCGGCGa -3'
miRNA:   3'- uaGCUGUG--CACGUGGC------UCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 26453 0.67 0.515329
Target:  5'- gGUCGGCcagcugcGCGUcgagcGCACCGAGCuGCuGGUGc -3'
miRNA:   3'- -UAGCUG-------UGCA-----CGUGGCUCGuUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 26340 0.7 0.319226
Target:  5'- -cCGAUACGU-CACCG-GCucGCGGCGg -3'
miRNA:   3'- uaGCUGUGCAcGUGGCuCGu-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 24944 0.75 0.151797
Target:  5'- -gCGACGCGUGCGCgCGGGCcgccuuGCGcGCGg -3'
miRNA:   3'- uaGCUGUGCACGUG-GCUCGu-----UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 23232 0.73 0.222451
Target:  5'- -cCGACg---GCACgCGAGCGGCGGCGg -3'
miRNA:   3'- uaGCUGugcaCGUG-GCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 22708 0.69 0.37834
Target:  5'- cUCGACACGauCGCCguGAGCGAgauCGGCGg -3'
miRNA:   3'- uAGCUGUGCacGUGG--CUCGUU---GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 22236 0.66 0.537848
Target:  5'- gAUCGuCGCGUGguUCacgaucAGCGACGGUGg -3'
miRNA:   3'- -UAGCuGUGCACguGGc-----UCGUUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.