miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 8490 0.7 0.335383
Target:  5'- -aCGACACGUG-GCuCGAGUcgcguAACGGCGu -3'
miRNA:   3'- uaGCUGUGCACgUG-GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11316 0.7 0.335383
Target:  5'- cUCGGCAgCGaGCGCCGcaaccGCGACGGCc -3'
miRNA:   3'- uAGCUGU-GCaCGUGGCu----CGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 20843 0.7 0.327231
Target:  5'- -cCGGCGuCGuUGCGCCGAuuGcCGGCGGCGa -3'
miRNA:   3'- uaGCUGU-GC-ACGUGGCU--C-GUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14699 0.7 0.319226
Target:  5'- cUCGuCGCGgcggGCggGCCGGGCG-CGGCGa -3'
miRNA:   3'- uAGCuGUGCa---CG--UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 26340 0.7 0.319226
Target:  5'- -cCGAUACGU-CACCG-GCucGCGGCGg -3'
miRNA:   3'- uaGCUGUGCAcGUGGCuCGu-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27436 0.71 0.309041
Target:  5'- cGUCGAUcgcgagugauugcaGCG-GCACCGuAGCAGCuGGCGc -3'
miRNA:   3'- -UAGCUG--------------UGCaCGUGGC-UCGUUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 33233 0.71 0.303661
Target:  5'- -cCGAUGCGcuUGCgACCaGAGUAACGGCGc -3'
miRNA:   3'- uaGCUGUGC--ACG-UGG-CUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 21228 0.72 0.26732
Target:  5'- uUCGugGCGUuggcgaGCACCGuGUuuGCGGCGa -3'
miRNA:   3'- uAGCugUGCA------CGUGGCuCGu-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 40161 0.72 0.26732
Target:  5'- cUCGcCGCGUGUgaGCUGcGCGACGGCa -3'
miRNA:   3'- uAGCuGUGCACG--UGGCuCGUUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 8407 0.72 0.26732
Target:  5'- --aGGCGCGUGgGCCGAGCAcgaccaGGCu -3'
miRNA:   3'- uagCUGUGCACgUGGCUCGUug----CCGc -5'
28011 5' -56.6 NC_005887.1 + 27963 0.72 0.260487
Target:  5'- gGUCGuacGCGCGcGCGCCGAGCGGCGa-- -3'
miRNA:   3'- -UAGC---UGUGCaCGUGGCUCGUUGCcgc -5'
28011 5' -56.6 NC_005887.1 + 23232 0.73 0.222451
Target:  5'- -cCGACg---GCACgCGAGCGGCGGCGg -3'
miRNA:   3'- uaGCUGugcaCGUG-GCUCGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11105 0.73 0.20749
Target:  5'- cAUCGGCugGUGCGCgCGAaGCuggccgaggcgccguGGCGGCGc -3'
miRNA:   3'- -UAGCUGugCACGUG-GCU-CG---------------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 18946 0.74 0.179183
Target:  5'- gAUCGACGCGcUGCugCGGcuGCcAGCGGCa -3'
miRNA:   3'- -UAGCUGUGC-ACGugGCU--CG-UUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 9339 0.74 0.178692
Target:  5'- aGUCGAUgggACG-GCACCGGGCAGgacgaauCGGCGa -3'
miRNA:   3'- -UAGCUG---UGCaCGUGGCUCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 37182 0.74 0.174332
Target:  5'- cUCGACGCGUGcCAUC-AGCAucaGCGGCGc -3'
miRNA:   3'- uAGCUGUGCAC-GUGGcUCGU---UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 16442 0.74 0.173853
Target:  5'- gAUCGAgaacCGCGUGCGCgCGGGCAugcgcucgaccgcGCGGCa -3'
miRNA:   3'- -UAGCU----GUGCACGUG-GCUCGU-------------UGCCGc -5'
28011 5' -56.6 NC_005887.1 + 9209 0.75 0.169131
Target:  5'- -gCGGCACGgucgGCugcuucuACCGAcGCAACGGCGa -3'
miRNA:   3'- uaGCUGUGCa---CG-------UGGCU-CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 38106 0.75 0.16498
Target:  5'- --aGACuGCGUGCgGCCGAGCGuCGGCGc -3'
miRNA:   3'- uagCUG-UGCACG-UGGCUCGUuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 14365 0.75 0.160475
Target:  5'- -aCGACGCGauucgGC-CCGAGcCGGCGGCGg -3'
miRNA:   3'- uaGCUGUGCa----CGuGGCUC-GUUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.