Results 41 - 60 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 2238 | 0.68 | 0.454327 |
Target: 5'- gGUCGGaaguCGUcGCGaCGAGCAugGGCGc -3' miRNA: 3'- -UAGCUgu--GCA-CGUgGCUCGUugCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 15264 | 0.68 | 0.44834 |
Target: 5'- uGUCGaaccagcgcagcaaGCGCG-GCACCGAGUucgugaagaagucgGGCGGCa -3' miRNA: 3'- -UAGC--------------UGUGCaCGUGGCUCG--------------UUGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 37865 | 0.68 | 0.444373 |
Target: 5'- -gCGAUGCGcGCGCCGuucGGCAccuucGCGGCa -3' miRNA: 3'- uaGCUGUGCaCGUGGC---UCGU-----UGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 27406 | 0.68 | 0.444373 |
Target: 5'- -gCGGCGCGUcGUACgGcAGCGcGCGGCGu -3' miRNA: 3'- uaGCUGUGCA-CGUGgC-UCGU-UGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 40231 | 0.68 | 0.444373 |
Target: 5'- --aGAacaGCGU--GCCGAGCGACGGCu -3' miRNA: 3'- uagCUg--UGCAcgUGGCUCGUUGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 40924 | 0.68 | 0.434544 |
Target: 5'- -cCG-CGCGcGCACCGAGUu-CGGCa -3' miRNA: 3'- uaGCuGUGCaCGUGGCUCGuuGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 11129 | 0.68 | 0.434544 |
Target: 5'- uUCGAuCGCGUcGUGCUGaAGCAcGCGGCGc -3' miRNA: 3'- uAGCU-GUGCA-CGUGGC-UCGU-UGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 40554 | 0.68 | 0.434544 |
Target: 5'- -gCGGCACGUcCuuCGGGUAGCGGCc -3' miRNA: 3'- uaGCUGUGCAcGugGCUCGUUGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 4495 | 0.68 | 0.431619 |
Target: 5'- -aCGGCGCGcGCAUCGcGCGucugcucgccgacuACGGCGg -3' miRNA: 3'- uaGCUGUGCaCGUGGCuCGU--------------UGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 28335 | 0.68 | 0.415269 |
Target: 5'- uGUCGGCGucUGCGCCG-GCG-CGGCa -3' miRNA: 3'- -UAGCUGUgcACGUGGCuCGUuGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 36923 | 0.68 | 0.415269 |
Target: 5'- --gGGCGCGUggucGCGCCGGucGCuGCGGCGc -3' miRNA: 3'- uagCUGUGCA----CGUGGCU--CGuUGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 38262 | 0.68 | 0.415269 |
Target: 5'- cUCGAUGCcgaucUGCGCCugcuugcccguGAGCAGCGGCu -3' miRNA: 3'- uAGCUGUGc----ACGUGG-----------CUCGUUGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 31250 | 0.68 | 0.412423 |
Target: 5'- uUCG-CGCGcaccagccgaUGCGCCacgcggaaucguuuGAGCAGCGGCGc -3' miRNA: 3'- uAGCuGUGC----------ACGUGG--------------CUCGUUGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 33869 | 0.69 | 0.405831 |
Target: 5'- cUCGAgcCACGUGUcgucGCCGAGCGGuuGCGc -3' miRNA: 3'- uAGCU--GUGCACG----UGGCUCGUUgcCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 30339 | 0.69 | 0.405831 |
Target: 5'- -gCGGCguGCGUGCGCCGGaugucuGCAACgugGGCGc -3' miRNA: 3'- uaGCUG--UGCACGUGGCU------CGUUG---CCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 41577 | 0.69 | 0.403959 |
Target: 5'- cUCGuuuuuccacugauACGCGUGC-CCGAuaccccaGCAAUGGCGg -3' miRNA: 3'- uAGC-------------UGUGCACGuGGCU-------CGUUGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 39424 | 0.69 | 0.396528 |
Target: 5'- -gCGGCGCuUGCGCagcuuGGCGGCGGCGu -3' miRNA: 3'- uaGCUGUGcACGUGgc---UCGUUGCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 22708 | 0.69 | 0.37834 |
Target: 5'- cUCGACACGauCGCCguGAGCGAgauCGGCGg -3' miRNA: 3'- uAGCUGUGCacGUGG--CUCGUU---GCCGC- -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 16941 | 0.69 | 0.37834 |
Target: 5'- -gCGAUGCGUGagcgcuucaACCGcGCGGCGGCa -3' miRNA: 3'- uaGCUGUGCACg--------UGGCuCGUUGCCGc -5' |
|||||||
28011 | 5' | -56.6 | NC_005887.1 | + | 5411 | 0.7 | 0.352129 |
Target: 5'- -cCGGCGgGcgGCGCCGcAGCGAcCGGCGc -3' miRNA: 3'- uaGCUGUgCa-CGUGGC-UCGUU-GCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home