miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28011 5' -56.6 NC_005887.1 + 28397 0.66 0.536768
Target:  5'- uGUCGaucacgcGCACGUcGCAgCCGAGCGcgcGCaGGCGc -3'
miRNA:   3'- -UAGC-------UGUGCA-CGU-GGCUCGU---UG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 34943 0.66 0.526007
Target:  5'- -gCGGCGgGUGCgACCGuGGCGAucgucguCGGCGa -3'
miRNA:   3'- uaGCUGUgCACG-UGGC-UCGUU-------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8434 0.67 0.516393
Target:  5'- gGUCGACGuCGaagGCuucacucCCGAGCAcgacgaccaauACGGCGa -3'
miRNA:   3'- -UAGCUGU-GCa--CGu------GGCUCGU-----------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 21605 0.67 0.516393
Target:  5'- -cCGGCGCGUGCAUUGGucacggaaaaauGCugGAUGGCGu -3'
miRNA:   3'- uaGCUGUGCACGUGGCU------------CG--UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 1793 0.67 0.515329
Target:  5'- cGUCGGCcgcuacccgaaggACGUGcCGCCGAccuGguACGGCa -3'
miRNA:   3'- -UAGCUG-------------UGCAC-GUGGCU---CguUGCCGc -5'
28011 5' -56.6 NC_005887.1 + 26453 0.67 0.515329
Target:  5'- gGUCGGCcagcugcGCGUcgagcGCACCGAGCuGCuGGUGc -3'
miRNA:   3'- -UAGCUG-------UGCA-----CGUGGCUCGuUG-CCGC- -5'
28011 5' -56.6 NC_005887.1 + 14906 0.67 0.505794
Target:  5'- cUCGA-ACGUGUggGCCG-GCAugGGCc -3'
miRNA:   3'- uAGCUgUGCACG--UGGCuCGUugCCGc -5'
28011 5' -56.6 NC_005887.1 + 11086 0.67 0.505794
Target:  5'- gAUCGACGCGgccgacgaGUACUGguGGCAgaACGGUGg -3'
miRNA:   3'- -UAGCUGUGCa-------CGUGGC--UCGU--UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 29855 0.67 0.505794
Target:  5'- uGUCGcaggcgaugaACACGUccuGCggcagGCCGAGCGuACGGCGu -3'
miRNA:   3'- -UAGC----------UGUGCA---CG-----UGGCUCGU-UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 257 0.67 0.49529
Target:  5'- cGUCGACGCGgcaucGCGCCccacGCGACaGCGc -3'
miRNA:   3'- -UAGCUGUGCa----CGUGGcu--CGUUGcCGC- -5'
28011 5' -56.6 NC_005887.1 + 6182 0.67 0.484886
Target:  5'- gGUCGGCACGgugacGCGCCGcGaCGAggaaacCGGCGa -3'
miRNA:   3'- -UAGCUGUGCa----CGUGGCuC-GUU------GCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2467 0.67 0.484886
Target:  5'- cGUCGACGag-GCGCUGAcGCGgaucaucgACGGCGa -3'
miRNA:   3'- -UAGCUGUgcaCGUGGCU-CGU--------UGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 11588 0.67 0.484886
Target:  5'- cUCGcCGCGcGCACgguCGAGCugaccGACGGCGa -3'
miRNA:   3'- uAGCuGUGCaCGUG---GCUCG-----UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 1950 0.67 0.483851
Target:  5'- -cCGGCACGUcggccGUGCCGGGCAucacgauuuccucGCGcGCGa -3'
miRNA:   3'- uaGCUGUGCA-----CGUGGCUCGU-------------UGC-CGC- -5'
28011 5' -56.6 NC_005887.1 + 15384 0.67 0.474587
Target:  5'- gGUCGACGCcgcgcugaucGCGCgCGGGCAGCGGa- -3'
miRNA:   3'- -UAGCUGUGca--------CGUG-GCUCGUUGCCgc -5'
28011 5' -56.6 NC_005887.1 + 40763 0.68 0.464399
Target:  5'- cGUUGGCGCGccGCgcgccGCCGAGC--CGGCGg -3'
miRNA:   3'- -UAGCUGUGCa-CG-----UGGCUCGuuGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 27337 0.68 0.464399
Target:  5'- cGUCGAC---UGCGCCacgcGCAGCGGCGc -3'
miRNA:   3'- -UAGCUGugcACGUGGcu--CGUUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 8985 0.68 0.454327
Target:  5'- -cCGGCGCGUGCACauccgcugcaguCGGGagaagugcaAACGGCGc -3'
miRNA:   3'- uaGCUGUGCACGUG------------GCUCg--------UUGCCGC- -5'
28011 5' -56.6 NC_005887.1 + 2238 0.68 0.454327
Target:  5'- gGUCGGaaguCGUcGCGaCGAGCAugGGCGc -3'
miRNA:   3'- -UAGCUgu--GCA-CGUgGCUCGUugCCGC- -5'
28011 5' -56.6 NC_005887.1 + 9059 0.68 0.454327
Target:  5'- -aCGuACGCGgauggaagUGCGCCG-GCuGCGGCGg -3'
miRNA:   3'- uaGC-UGUGC--------ACGUGGCuCGuUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.