miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 11379 0.71 0.268539
Target:  5'- gGGCgucaGCGcagcCGGAGCGCUggcgGCCGgCGCc -3'
miRNA:   3'- -CCGg---CGCu---GCUUCGCGAa---UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 11550 0.68 0.37723
Target:  5'- aGGCCGCGGUGc-GCGCcauugAUCGCgCGCa -3'
miRNA:   3'- -CCGGCGCUGCuuCGCGaa---UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 11881 0.66 0.543382
Target:  5'- gGGCCGCGuc---GCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCugcuuCGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 11994 0.66 0.489271
Target:  5'- aGGUCGCGcccACGuugcagacauccGGCGCacGCaCGCCGCu -3'
miRNA:   3'- -CCGGCGC---UGCu-----------UCGCGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 12111 0.78 0.090086
Target:  5'- uGGCCGCG-CaGAAGCGCcaggacgagcagGCCGCCGUc -3'
miRNA:   3'- -CCGGCGCuG-CUUCGCGaa----------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 12141 0.79 0.076851
Target:  5'- aGGCCGCGACGcGGCGUggcugGCCGgCGa -3'
miRNA:   3'- -CCGGCGCUGCuUCGCGaa---UGGCgGCg -5'
28012 5' -58 NC_005887.1 + 12461 0.69 0.368555
Target:  5'- gGGCCGUGAaGAAacgccguaCGCUcgGCCuGCCGCa -3'
miRNA:   3'- -CCGGCGCUgCUUc-------GCGAa-UGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 12567 0.68 0.37723
Target:  5'- cGGCCGcCGGCau-GCGCauggUGuCCGCCGa -3'
miRNA:   3'- -CCGGC-GCUGcuuCGCGa---AU-GGCGGCg -5'
28012 5' -58 NC_005887.1 + 12600 0.75 0.146263
Target:  5'- cGGCCGCGACGcucGGCGU--GCUGaCGCa -3'
miRNA:   3'- -CCGGCGCUGCu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 12675 0.68 0.422615
Target:  5'- uGCCGcCGACGAa--GCUUAUCGCguUGCa -3'
miRNA:   3'- cCGGC-GCUGCUucgCGAAUGGCG--GCG- -5'
28012 5' -58 NC_005887.1 + 12720 0.67 0.471125
Target:  5'- uGGUCGCGcagcaGCaGAAuGCGCUcgauCgCGCCGCg -3'
miRNA:   3'- -CCGGCGC-----UG-CUU-CGCGAau--G-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 12818 0.66 0.492328
Target:  5'- aGGCCGuCGcgcGCGAcGUGCUguucuacaacgcgcCCGCCGUc -3'
miRNA:   3'- -CCGGC-GC---UGCUuCGCGAau------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 12971 0.7 0.319433
Target:  5'- cGCCGCaugGGCcGAGgGCaUGCCGCuCGCg -3'
miRNA:   3'- cCGGCG---CUGcUUCgCGaAUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 13070 0.66 0.522304
Target:  5'- aGGCCGaucCGugGAacgcGGCGCUcgAUCGCgGa -3'
miRNA:   3'- -CCGGC---GCugCU----UCGCGAa-UGGCGgCg -5'
28012 5' -58 NC_005887.1 + 13146 0.69 0.35162
Target:  5'- gGGCCuCGucuCGu--CGCUUGCCGCgCGCg -3'
miRNA:   3'- -CCGGcGCu--GCuucGCGAAUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 13220 0.7 0.31174
Target:  5'- cGCUGCugacgccaGACGAGGCagagaagacGCUgACCGCCGUc -3'
miRNA:   3'- cCGGCG--------CUGCUUCG---------CGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 13394 0.72 0.236338
Target:  5'- aGGCCggcGCGGCGGacgucGGCgGCaaGCCGCUGCu -3'
miRNA:   3'- -CCGG---CGCUGCU-----UCG-CGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 13466 0.68 0.404067
Target:  5'- aGCCGuCGACGGu-CGCUaccccgauUACCGgCGCa -3'
miRNA:   3'- cCGGC-GCUGCUucGCGA--------AUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 13617 0.7 0.319433
Target:  5'- uGGCaGCG-CGgcGCGCg-GCgGCCGCa -3'
miRNA:   3'- -CCGgCGCuGCuuCGCGaaUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 13755 0.68 0.37723
Target:  5'- cGGCuggCGCGAgGAcgauuuccagAGCGCcgUgaagcaggucACCGCCGCg -3'
miRNA:   3'- -CCG---GCGCUgCU----------UCGCGa-A----------UGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.