miRNA display CGI


Results 61 - 80 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 7978 0.72 0.212963
Target:  5'- cGGCCGCcucugauacGCGggGCGCUcgucuCCaGCCGUg -3'
miRNA:   3'- -CCGGCGc--------UGCuuCGCGAau---GG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 8070 0.67 0.481165
Target:  5'- aGCCGCacGGCGAcggcauGCGCaaGCCGCgaGCg -3'
miRNA:   3'- cCGGCG--CUGCUu-----CGCGaaUGGCGg-CG- -5'
28012 5' -58 NC_005887.1 + 8081 0.67 0.471125
Target:  5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3'
miRNA:   3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 8308 0.68 0.41235
Target:  5'- cGCCGauugGACGAGuGCGCUcgaaaugUACaaGCCGCa -3'
miRNA:   3'- cCGGCg---CUGCUU-CGCGA-------AUGg-CGGCG- -5'
28012 5' -58 NC_005887.1 + 8398 0.66 0.522304
Target:  5'- cGCCGCacGCGAcGUGCUcGCCGagCGCc -3'
miRNA:   3'- cCGGCGc-UGCUuCGCGAaUGGCg-GCG- -5'
28012 5' -58 NC_005887.1 + 8415 0.67 0.471125
Target:  5'- gGGCCGagcACGAccAG-GC-UAUCGCCGCa -3'
miRNA:   3'- -CCGGCgc-UGCU--UCgCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8475 0.86 0.02485
Target:  5'- -aCgGCGACGGAGCGCUgucgGCUGCCGCa -3'
miRNA:   3'- ccGgCGCUGCUUCGCGAa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8558 0.7 0.310978
Target:  5'- uGGCCGUggguccgcgcuugGugGAAGC-CcgGCaCGCCGCg -3'
miRNA:   3'- -CCGGCG-------------CugCUUCGcGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 8632 0.76 0.114055
Target:  5'- cGCCGCGAUcGAGCaGaucgACCGCCGCg -3'
miRNA:   3'- cCGGCGCUGcUUCG-Cgaa-UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8710 0.81 0.056079
Target:  5'- cGCCGCGGCGGuaAGCGCU--UCGUCGCg -3'
miRNA:   3'- cCGGCGCUGCU--UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 9180 0.75 0.150316
Target:  5'- cGGCCGCuACGAAuGCaCgaagcACCGCCGCg -3'
miRNA:   3'- -CCGGCGcUGCUU-CGcGaa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 9566 0.68 0.394988
Target:  5'- cGGCgCGCGcCGAuccuGCGCacgaGCCgGCUGCa -3'
miRNA:   3'- -CCG-GCGCuGCUu---CGCGaa--UGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 9601 0.73 0.207438
Target:  5'- uGGCgCGCGcCGgcGCGCacgcgAgCGCCGCg -3'
miRNA:   3'- -CCG-GCGCuGCuuCGCGaa---UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 9900 0.68 0.404067
Target:  5'- cGCCGCgcaGugGcuGCGCaaccugAUCGCCGCc -3'
miRNA:   3'- cCGGCG---CugCuuCGCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 10614 0.77 0.104878
Target:  5'- gGGgCGCaGCGAAGCGUUUGCagcaggcagaaCGCCGCa -3'
miRNA:   3'- -CCgGCGcUGCUUCGCGAAUG-----------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 10710 0.72 0.236338
Target:  5'- --aCGCGAUGGAccGCGCggUGCCGCUGUu -3'
miRNA:   3'- ccgGCGCUGCUU--CGCGa-AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 10890 0.66 0.543382
Target:  5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5'
28012 5' -58 NC_005887.1 + 11067 0.66 0.532806
Target:  5'- cGGUCGagcuCGACGAGGCGaucgacGCgGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCUUCGCgaa---UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 11115 0.66 0.510846
Target:  5'- uGCgCGCGAagcuggcCGAGGCGCcgUGgCGgCGCa -3'
miRNA:   3'- cCG-GCGCU-------GCUUCGCGa-AUgGCgGCG- -5'
28012 5' -58 NC_005887.1 + 11325 0.67 0.481165
Target:  5'- aGCCGCGGCcu-GCGaauagugGCCugcGCCGCg -3'
miRNA:   3'- cCGGCGCUGcuuCGCgaa----UGG---CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.