miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 26911 0.72 0.236338
Target:  5'- aGCUGCGccCGAGuCGCUgGCCGCCGUc -3'
miRNA:   3'- cCGGCGCu-GCUUcGCGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 13394 0.72 0.236338
Target:  5'- aGGCCggcGCGGCGGacgucGGCgGCaaGCCGCUGCu -3'
miRNA:   3'- -CCGG---CGCUGCU-----UCG-CGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 10710 0.72 0.236338
Target:  5'- --aCGCGAUGGAccGCGCggUGCCGCUGUu -3'
miRNA:   3'- ccgGCGCUGCUU--CGCGa-AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34938 0.72 0.236338
Target:  5'- aGGCgGCGGCG-GGUGCg-ACCGUgGCg -3'
miRNA:   3'- -CCGgCGCUGCuUCGCGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 4583 0.72 0.236338
Target:  5'- aGCCGC--CGAGGCGCagGCCG-CGCa -3'
miRNA:   3'- cCGGCGcuGCUUCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 37108 0.72 0.236338
Target:  5'- aGCCuCGGCGAucGCGCg-GCCGUCGCc -3'
miRNA:   3'- cCGGcGCUGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 17395 0.72 0.242509
Target:  5'- cGGCCGCGcgcaagGCGGcccGCGCgcACCGCguCGCg -3'
miRNA:   3'- -CCGGCGC------UGCUu--CGCGaaUGGCG--GCG- -5'
28012 5' -58 NC_005887.1 + 41284 0.72 0.242509
Target:  5'- -cCUGCGcACGGGcGCGCUgcUGCCGCCGg -3'
miRNA:   3'- ccGGCGC-UGCUU-CGCGA--AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 39644 0.72 0.242509
Target:  5'- cGUCGCG-CGGcucGGcCGCUUGCCGcCCGUa -3'
miRNA:   3'- cCGGCGCuGCU---UC-GCGAAUGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 28718 0.72 0.242509
Target:  5'- uGCUGCucGGCuGAGUGCg-GCCGCCGCg -3'
miRNA:   3'- cCGGCG--CUGcUUCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 29620 0.71 0.248813
Target:  5'- cGG-CGCGAUcGAGCGCauucUGCUGCUGCg -3'
miRNA:   3'- -CCgGCGCUGcUUCGCGa---AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6781 0.71 0.248813
Target:  5'- aGGCCGUGuGCccGGCGCU---CGCCGCa -3'
miRNA:   3'- -CCGGCGC-UGcuUCGCGAaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 28323 0.71 0.248813
Target:  5'- aGGCUGCGccgGCGgcGCGCcgGCgGuuGCg -3'
miRNA:   3'- -CCGGCGC---UGCuuCGCGaaUGgCggCG- -5'
28012 5' -58 NC_005887.1 + 2935 0.71 0.248813
Target:  5'- aGCUGCG-C-AAGCGCcgcggcACCGCCGCg -3'
miRNA:   3'- cCGGCGCuGcUUCGCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 32504 0.71 0.25266
Target:  5'- cGGCgCGCGGCGuucagguuggccGCGCUgACCgGCUGCg -3'
miRNA:   3'- -CCG-GCGCUGCuu----------CGCGAaUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 1481 0.71 0.255252
Target:  5'- cGCCGaCGGCGugcGGCGCUcGCgCGgCGCg -3'
miRNA:   3'- cCGGC-GCUGCu--UCGCGAaUG-GCgGCG- -5'
28012 5' -58 NC_005887.1 + 38237 0.71 0.261827
Target:  5'- uGGCCGgGAUGGucgAGCGCUcgAUCGacaCGCu -3'
miRNA:   3'- -CCGGCgCUGCU---UCGCGAa-UGGCg--GCG- -5'
28012 5' -58 NC_005887.1 + 28623 0.71 0.261827
Target:  5'- cGGCauCGCGACGAuGUucgGCUUGCCguugaucugcugGCCGCc -3'
miRNA:   3'- -CCG--GCGCUGCUuCG---CGAAUGG------------CGGCG- -5'
28012 5' -58 NC_005887.1 + 2164 0.71 0.261827
Target:  5'- uGGCCgGCGGCGAuuCcCUucgUGCCGUCGCg -3'
miRNA:   3'- -CCGG-CGCUGCUucGcGA---AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 24941 0.71 0.268539
Target:  5'- -aUCGCGACGcguGCGCgcggGCCGCCuuGCg -3'
miRNA:   3'- ccGGCGCUGCuu-CGCGaa--UGGCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.