miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 7398 0.73 0.191093
Target:  5'- cGCCGaCGACGAucgccacGGuCGCacccGCCGCCGCc -3'
miRNA:   3'- cCGGC-GCUGCU-------UC-GCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34270 0.73 0.191602
Target:  5'- cGCuCGCGGCuu-GCGCaUGCCGUCGCc -3'
miRNA:   3'- cCG-GCGCUGcuuCGCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 13394 0.72 0.236338
Target:  5'- aGGCCggcGCGGCGGacgucGGCgGCaaGCCGCUGCu -3'
miRNA:   3'- -CCGG---CGCUGCU-----UCG-CGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 10710 0.72 0.236338
Target:  5'- --aCGCGAUGGAccGCGCggUGCCGCUGUu -3'
miRNA:   3'- ccgGCGCUGCUU--CGCGa-AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 37108 0.72 0.236338
Target:  5'- aGCCuCGGCGAucGCGCg-GCCGUCGCc -3'
miRNA:   3'- cCGGcGCUGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41284 0.72 0.242509
Target:  5'- -cCUGCGcACGGGcGCGCUgcUGCCGCCGg -3'
miRNA:   3'- ccGGCGC-UGCUU-CGCGA--AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 2935 0.71 0.248813
Target:  5'- aGCUGCG-C-AAGCGCcgcggcACCGCCGCg -3'
miRNA:   3'- cCGGCGCuGcUUCGCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 1481 0.71 0.255252
Target:  5'- cGCCGaCGGCGugcGGCGCUcGCgCGgCGCg -3'
miRNA:   3'- cCGGC-GCUGCu--UCGCGAaUG-GCgGCG- -5'
28012 5' -58 NC_005887.1 + 38237 0.71 0.261827
Target:  5'- uGGCCGgGAUGGucgAGCGCUcgAUCGacaCGCu -3'
miRNA:   3'- -CCGGCgCUGCU---UCGCGAa-UGGCg--GCG- -5'
28012 5' -58 NC_005887.1 + 11379 0.71 0.268539
Target:  5'- gGGCgucaGCGcagcCGGAGCGCUggcgGCCGgCGCc -3'
miRNA:   3'- -CCGg---CGCu---GCUUCGCGAa---UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 4583 0.72 0.236338
Target:  5'- aGCCGC--CGAGGCGCagGCCG-CGCa -3'
miRNA:   3'- cCGGCGcuGCUUCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 26911 0.72 0.236338
Target:  5'- aGCUGCGccCGAGuCGCUgGCCGCCGUc -3'
miRNA:   3'- cCGGCGCu-GCUUcGCGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4800 0.73 0.202038
Target:  5'- aGGCCGUGcucGCGGAucucGCGCaguuCUGCCGCg -3'
miRNA:   3'- -CCGGCGC---UGCUU----CGCGaau-GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 22975 0.73 0.207438
Target:  5'- aGCUGCG-CGAgcauGGCGCgUUGCCGCUGa -3'
miRNA:   3'- cCGGCGCuGCU----UCGCG-AAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 17168 0.73 0.207438
Target:  5'- cGCgagGCGugGGAGCGCgcgaacgcgGCCGCaCGCg -3'
miRNA:   3'- cCGg--CGCugCUUCGCGaa-------UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 36395 0.73 0.207985
Target:  5'- cGGCCGCGAUGGuggucugguucauuuGCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCUGCUu--------------CGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 26331 0.72 0.218614
Target:  5'- aGGCCGUGGCc-GGCGCUgGCCGggugCGCg -3'
miRNA:   3'- -CCGGCGCUGcuUCGCGAaUGGCg---GCG- -5'
28012 5' -58 NC_005887.1 + 16833 0.72 0.223809
Target:  5'- -cCCGCGAUGGAGCGCgacaUcauccgcgaggugUACCGCgGCg -3'
miRNA:   3'- ccGGCGCUGCUUCGCG----A-------------AUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 3617 0.72 0.224392
Target:  5'- aGGCCGCG-C--AGCGCUU-CgGCCGUg -3'
miRNA:   3'- -CCGGCGCuGcuUCGCGAAuGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 24599 0.72 0.2303
Target:  5'- gGGuUCGCGGCGAuGauCUUGCgGCCGCa -3'
miRNA:   3'- -CC-GGCGCUGCUuCgcGAAUGgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.