miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 17628 0.67 0.432079
Target:  5'- cGCUGCGcACGAcggucAGCGCcgUGaaGCUGCa -3'
miRNA:   3'- cCGGCGC-UGCU-----UCGCGa-AUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 22782 0.67 0.432079
Target:  5'- uGGCU-CGACGccGGCGCg-GCCGCUGUu -3'
miRNA:   3'- -CCGGcGCUGCu-UCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 25024 0.67 0.432079
Target:  5'- cGGCCGcCGGCcagccgguAGCGCagaACCcauGCCGCa -3'
miRNA:   3'- -CCGGC-GCUGcu------UCGCGaa-UGG---CGGCG- -5'
28012 5' -58 NC_005887.1 + 17054 0.67 0.441665
Target:  5'- cGGCaCGCuugGGCGGA-CGCcgucaUGCCGCUGCu -3'
miRNA:   3'- -CCG-GCG---CUGCUUcGCGa----AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 36038 0.67 0.441665
Target:  5'- cGGCgC-CGGCGAGGCGCaaggccucgACgCGCuCGCg -3'
miRNA:   3'- -CCG-GcGCUGCUUCGCGaa-------UG-GCG-GCG- -5'
28012 5' -58 NC_005887.1 + 40909 0.67 0.441665
Target:  5'- aGCCGC--CGAAG-GC-UACCGCgCGCg -3'
miRNA:   3'- cCGGCGcuGCUUCgCGaAUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 12720 0.67 0.471125
Target:  5'- uGGUCGCGcagcaGCaGAAuGCGCUcgauCgCGCCGCg -3'
miRNA:   3'- -CCGGCGC-----UG-CUU-CGCGAau--G-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 21551 0.67 0.44263
Target:  5'- cGCUGCaGGCGAccGGCGCaauuacgccauccagUACUGCCGg -3'
miRNA:   3'- cCGGCG-CUGCU--UCGCGa--------------AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 5149 0.67 0.45137
Target:  5'- uGCC-CGACGucGGCGC--GCCGCUGa -3'
miRNA:   3'- cCGGcGCUGCu-UCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 29662 0.67 0.45137
Target:  5'- cGCgGCG-CGAgguagcacagcuGGCGCUUGCUuggcaGCUGCa -3'
miRNA:   3'- cCGgCGCuGCU------------UCGCGAAUGG-----CGGCG- -5'
28012 5' -58 NC_005887.1 + 29759 0.67 0.45137
Target:  5'- uGCC-CGGCGAGcugaucGCGaggAUCGCCGCg -3'
miRNA:   3'- cCGGcGCUGCUU------CGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2535 0.67 0.460204
Target:  5'- cGCUGCG-CaAGGCGCUgucgGgcggcuacugcuuCCGCCGCa -3'
miRNA:   3'- cCGGCGCuGcUUCGCGAa---U-------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 14701 0.67 0.461192
Target:  5'- cGUCGCGGCGGgcgggccgGGCGCggcgAUCG-CGCa -3'
miRNA:   3'- cCGGCGCUGCU--------UCGCGaa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 2190 0.67 0.465152
Target:  5'- cGGCCGCGGUGAucgggcAGCGCaaaccgaugggcgGCUGgCGCa -3'
miRNA:   3'- -CCGGCGCUGCU------UCGCGaa-----------UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 14885 0.67 0.479148
Target:  5'- --gCGCGGCaGAAuGCGCcagcugcuacggUGCCGCUGCa -3'
miRNA:   3'- ccgGCGCUG-CUU-CGCGa-----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 33868 0.67 0.481165
Target:  5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3'
miRNA:   3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 29187 0.67 0.481165
Target:  5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3'
miRNA:   3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 8415 0.67 0.471125
Target:  5'- gGGCCGagcACGAccAG-GC-UAUCGCCGCa -3'
miRNA:   3'- -CCGGCgc-UGCU--UCgCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 30435 0.67 0.471125
Target:  5'- aGGCCGaCGuCGggGCgggGCaUGuuGCCGg -3'
miRNA:   3'- -CCGGC-GCuGCuuCG---CGaAUggCGGCg -5'
28012 5' -58 NC_005887.1 + 8081 0.67 0.471125
Target:  5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3'
miRNA:   3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.