Results 61 - 80 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 35081 | 0.67 | 0.481165 |
Target: 5'- cGGCCGgggcCGAUGucGCGgUcGCUGCCGa -3' miRNA: 3'- -CCGGC----GCUGCuuCGCgAaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 26943 | 0.67 | 0.481165 |
Target: 5'- uGCgCGuCGACGAucCGCUgcCCGCgCGCg -3' miRNA: 3'- cCG-GC-GCUGCUucGCGAauGGCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 17054 | 0.67 | 0.441665 |
Target: 5'- cGGCaCGCuugGGCGGA-CGCcgucaUGCCGCUGCu -3' miRNA: 3'- -CCG-GCG---CUGCUUcGCGa----AUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 36038 | 0.67 | 0.441665 |
Target: 5'- cGGCgC-CGGCGAGGCGCaaggccucgACgCGCuCGCg -3' miRNA: 3'- -CCG-GcGCUGCUUCGCGaa-------UG-GCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 40909 | 0.67 | 0.441665 |
Target: 5'- aGCCGC--CGAAG-GC-UACCGCgCGCg -3' miRNA: 3'- cCGGCGcuGCUUCgCGaAUGGCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 12720 | 0.67 | 0.471125 |
Target: 5'- uGGUCGCGcagcaGCaGAAuGCGCUcgauCgCGCCGCg -3' miRNA: 3'- -CCGGCGC-----UG-CUU-CGCGAau--G-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 30435 | 0.67 | 0.471125 |
Target: 5'- aGGCCGaCGuCGggGCgggGCaUGuuGCCGg -3' miRNA: 3'- -CCGGC-GCuGCuuCG---CGaAUggCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8415 | 0.67 | 0.471125 |
Target: 5'- gGGCCGagcACGAccAG-GC-UAUCGCCGCa -3' miRNA: 3'- -CCGGCgc-UGCU--UCgCGaAUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8081 | 0.67 | 0.471125 |
Target: 5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3' miRNA: 3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 29187 | 0.67 | 0.481165 |
Target: 5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3' miRNA: 3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 33868 | 0.67 | 0.481165 |
Target: 5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3' miRNA: 3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14885 | 0.67 | 0.479148 |
Target: 5'- --gCGCGGCaGAAuGCGCcagcugcuacggUGCCGCUGCa -3' miRNA: 3'- ccgGCGCUG-CUU-CGCGa-----------AUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2190 | 0.67 | 0.465152 |
Target: 5'- cGGCCGCGGUGAucgggcAGCGCaaaccgaugggcgGCUGgCGCa -3' miRNA: 3'- -CCGGCGCUGCU------UCGCGaa-----------UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14701 | 0.67 | 0.461192 |
Target: 5'- cGUCGCGGCGGgcgggccgGGCGCggcgAUCG-CGCa -3' miRNA: 3'- cCGGCGCUGCU--------UCGCGaa--UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2535 | 0.67 | 0.460204 |
Target: 5'- cGCUGCG-CaAGGCGCUgucgGgcggcuacugcuuCCGCCGCa -3' miRNA: 3'- cCGGCGCuGcUUCGCGAa---U-------------GGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 29759 | 0.67 | 0.45137 |
Target: 5'- uGCC-CGGCGAGcugaucGCGaggAUCGCCGCg -3' miRNA: 3'- cCGGcGCUGCUU------CGCgaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 29662 | 0.67 | 0.45137 |
Target: 5'- cGCgGCG-CGAgguagcacagcuGGCGCUUGCUuggcaGCUGCa -3' miRNA: 3'- cCGgCGCuGCU------------UCGCGAAUGG-----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5149 | 0.67 | 0.45137 |
Target: 5'- uGCC-CGACGucGGCGC--GCCGCUGa -3' miRNA: 3'- cCGGcGCUGCu-UCGCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 21551 | 0.67 | 0.44263 |
Target: 5'- cGCUGCaGGCGAccGGCGCaauuacgccauccagUACUGCCGg -3' miRNA: 3'- cCGGCG-CUGCU--UCGCGa--------------AUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 33160 | 0.67 | 0.441665 |
Target: 5'- uGCCGCGGCG--GUGCUUcgugcauucguaGCgGCCGg -3' miRNA: 3'- cCGGCGCUGCuuCGCGAA------------UGgCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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