miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 25054 0.66 0.491308
Target:  5'- cGCCGaacCGGCGuuuGCGCgcgcGgCGCCGCc -3'
miRNA:   3'- cCGGC---GCUGCuu-CGCGaa--UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 35337 0.66 0.522304
Target:  5'- cGCCGCGGCGGccGGCcacgaGCUU-CaCGCCcgGCa -3'
miRNA:   3'- cCGGCGCUGCU--UCG-----CGAAuG-GCGG--CG- -5'
28012 5' -58 NC_005887.1 + 842 0.66 0.515
Target:  5'- cGGCCGCGAaGAaagccaaGGUGCccgUggacgcguggcccgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUgCU-------UCGCGa--A---------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 4478 0.66 0.511883
Target:  5'- uGCCGCGAaggugccgaaCGgcGCGCgcAUCGCgCGUc -3'
miRNA:   3'- cCGGCGCU----------GCuuCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 15770 0.66 0.543382
Target:  5'- aGGCCGCGgccGCGAAgGCGCagaagcagAUCGauGCg -3'
miRNA:   3'- -CCGGCGC---UGCUU-CGCGaa------UGGCggCG- -5'
28012 5' -58 NC_005887.1 + 5010 0.66 0.532806
Target:  5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3'
miRNA:   3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 38054 0.66 0.532806
Target:  5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3'
miRNA:   3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5'
28012 5' -58 NC_005887.1 + 32737 0.66 0.543382
Target:  5'- gGGUagCGCGGCGcucgcGUGCgcGCCGgCGCg -3'
miRNA:   3'- -CCG--GCGCUGCuu---CGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 39092 0.66 0.543382
Target:  5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3'
miRNA:   3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 14768 0.66 0.539143
Target:  5'- cGCU-CGACGgcGCGCUcgcgcuguacuuCCGCUGCg -3'
miRNA:   3'- cCGGcGCUGCuuCGCGAau----------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 18979 0.66 0.522304
Target:  5'- gGGCaCGCGGCagcauGGCGCagucuaACCaaagGCCGCg -3'
miRNA:   3'- -CCG-GCGCUGcu---UCGCGaa----UGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 29187 0.67 0.481165
Target:  5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3'
miRNA:   3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 17628 0.67 0.432079
Target:  5'- cGCUGCGcACGAcggucAGCGCcgUGaaGCUGCa -3'
miRNA:   3'- cCGGCGC-UGCU-----UCGCGa-AUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 22782 0.67 0.432079
Target:  5'- uGGCU-CGACGccGGCGCg-GCCGCUGUu -3'
miRNA:   3'- -CCGGcGCUGCu-UCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 25024 0.67 0.432079
Target:  5'- cGGCCGcCGGCcagccgguAGCGCagaACCcauGCCGCa -3'
miRNA:   3'- -CCGGC-GCUGcu------UCGCGaa-UGG---CGGCG- -5'
28012 5' -58 NC_005887.1 + 41331 0.67 0.431127
Target:  5'- cGGUCGUGACGccGguugaguacgaucCGCgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGCuuC-------------GCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 3131 0.67 0.432079
Target:  5'- aGGCCGUGugGAAcGaCGUcaucgacUACCugauGCCGCg -3'
miRNA:   3'- -CCGGCGCugCUU-C-GCGa------AUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 14885 0.67 0.479148
Target:  5'- --gCGCGGCaGAAuGCGCcagcugcuacggUGCCGCUGCa -3'
miRNA:   3'- ccgGCGCUG-CUU-CGCGa-----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 33868 0.67 0.481165
Target:  5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3'
miRNA:   3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8081 0.67 0.471125
Target:  5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3'
miRNA:   3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.