Results 41 - 60 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 24974 | 0.66 | 0.543382 |
Target: 5'- cGGCCGCGAgggacagguCGggGUagUUGCCGa-GCg -3' miRNA: 3'- -CCGGCGCU---------GCuuCGcgAAUGGCggCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 17864 | 0.66 | 0.532806 |
Target: 5'- -cUCGCGACGAcgugGGCcCggaaccuguCCGCCGCg -3' miRNA: 3'- ccGGCGCUGCU----UCGcGaau------GGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 15770 | 0.66 | 0.543382 |
Target: 5'- aGGCCGCGgccGCGAAgGCGCagaagcagAUCGauGCg -3' miRNA: 3'- -CCGGCGC---UGCUU-CGCGaa------UGGCggCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5010 | 0.66 | 0.532806 |
Target: 5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3' miRNA: 3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 38054 | 0.66 | 0.532806 |
Target: 5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3' miRNA: 3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 32737 | 0.66 | 0.543382 |
Target: 5'- gGGUagCGCGGCGcucgcGUGCgcGCCGgCGCg -3' miRNA: 3'- -CCG--GCGCUGCuu---CGCGaaUGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39092 | 0.66 | 0.543382 |
Target: 5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3' miRNA: 3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14768 | 0.66 | 0.539143 |
Target: 5'- cGCU-CGACGgcGCGCUcgcgcuguacuuCCGCUGCg -3' miRNA: 3'- cCGGcGCUGCuuCGCGAau----------GGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27647 | 0.66 | 0.532806 |
Target: 5'- cGCCGCGccCGGccCGC---CCGCCGCg -3' miRNA: 3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 10890 | 0.66 | 0.543382 |
Target: 5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3' miRNA: 3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 42000 | 0.66 | 0.543382 |
Target: 5'- cGGCCuGCGGCccacgucGAGUGUc-GCCGCgGCg -3' miRNA: 3'- -CCGG-CGCUGc------UUCGCGaaUGGCGgCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14885 | 0.67 | 0.479148 |
Target: 5'- --gCGCGGCaGAAuGCGCcagcugcuacggUGCCGCUGCa -3' miRNA: 3'- ccgGCGCUG-CUU-CGCGa-----------AUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 33868 | 0.67 | 0.481165 |
Target: 5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3' miRNA: 3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 29187 | 0.67 | 0.481165 |
Target: 5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3' miRNA: 3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8081 | 0.67 | 0.471125 |
Target: 5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3' miRNA: 3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 17628 | 0.67 | 0.432079 |
Target: 5'- cGCUGCGcACGAcggucAGCGCcgUGaaGCUGCa -3' miRNA: 3'- cCGGCGC-UGCU-----UCGCGa-AUggCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 41331 | 0.67 | 0.431127 |
Target: 5'- cGGUCGUGACGccGguugaguacgaucCGCgcGCCGCCGg -3' miRNA: 3'- -CCGGCGCUGCuuC-------------GCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 3131 | 0.67 | 0.432079 |
Target: 5'- aGGCCGUGugGAAcGaCGUcaucgacUACCugauGCCGCg -3' miRNA: 3'- -CCGGCGCugCUU-C-GCGa------AUGG----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 25024 | 0.67 | 0.432079 |
Target: 5'- cGGCCGcCGGCcagccgguAGCGCagaACCcauGCCGCa -3' miRNA: 3'- -CCGGC-GCUGcu------UCGCGaa-UGG---CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 22782 | 0.67 | 0.432079 |
Target: 5'- uGGCU-CGACGccGGCGCg-GCCGCUGUu -3' miRNA: 3'- -CCGGcGCUGCu-UCGCGaaUGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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