miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 16936 0.74 0.163092
Target:  5'- cGGgCGCGAUGcguGAGCGCUUcaACCG-CGCg -3'
miRNA:   3'- -CCgGCGCUGC---UUCGCGAA--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 39776 0.74 0.167563
Target:  5'- uGGUCGCGGCGcucGCGCcgAUCGuuGCg -3'
miRNA:   3'- -CCGGCGCUGCuu-CGCGaaUGGCggCG- -5'
28012 5' -58 NC_005887.1 + 407 0.74 0.172144
Target:  5'- cGCCGCGAaGAcGCGCcgcGCCGcCCGCu -3'
miRNA:   3'- cCGGCGCUgCUuCGCGaa-UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 9601 0.73 0.207438
Target:  5'- uGGCgCGCGcCGgcGCGCacgcgAgCGCCGCg -3'
miRNA:   3'- -CCG-GCGCuGCuuCGCGaa---UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 7398 0.73 0.191093
Target:  5'- cGCCGaCGACGAucgccacGGuCGCacccGCCGCCGCc -3'
miRNA:   3'- cCGGC-GCUGCU-------UC-GCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34270 0.73 0.191602
Target:  5'- cGCuCGCGGCuu-GCGCaUGCCGUCGCc -3'
miRNA:   3'- cCG-GCGCUGcuuCGCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4800 0.73 0.202038
Target:  5'- aGGCCGUGcucGCGGAucucGCGCaguuCUGCCGCg -3'
miRNA:   3'- -CCGGCGC---UGCUU----CGCGaau-GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 22975 0.73 0.207438
Target:  5'- aGCUGCG-CGAgcauGGCGCgUUGCCGCUGa -3'
miRNA:   3'- cCGGCGCuGCU----UCGCG-AAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 17168 0.73 0.207438
Target:  5'- cGCgagGCGugGGAGCGCgcgaacgcgGCCGCaCGCg -3'
miRNA:   3'- cCGg--CGCugCUUCGCGaa-------UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 36395 0.73 0.207985
Target:  5'- cGGCCGCGAUGGuggucugguucauuuGCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCUGCUu--------------CGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 30218 0.73 0.183598
Target:  5'- uGGCgCGCGACGGcggccugcucguccuGGCGCUUcugcGCgGCCaGCa -3'
miRNA:   3'- -CCG-GCGCUGCU---------------UCGCGAA----UGgCGG-CG- -5'
28012 5' -58 NC_005887.1 + 692 0.73 0.191093
Target:  5'- cGGCuCGCcaacguaGACGAAGCGUg---CGCCGCg -3'
miRNA:   3'- -CCG-GCG-------CUGCUUCGCGaaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 17395 0.72 0.242509
Target:  5'- cGGCCGCGcgcaagGCGGcccGCGCgcACCGCguCGCg -3'
miRNA:   3'- -CCGGCGC------UGCUu--CGCGaaUGGCG--GCG- -5'
28012 5' -58 NC_005887.1 + 26331 0.72 0.218614
Target:  5'- aGGCCGUGGCc-GGCGCUgGCCGggugCGCg -3'
miRNA:   3'- -CCGGCGCUGcuUCGCGAaUGGCg---GCG- -5'
28012 5' -58 NC_005887.1 + 17524 0.72 0.2327
Target:  5'- -uCCGC-ACGAAGCGCUUugCgcaggacaucgagaaGCCGCu -3'
miRNA:   3'- ccGGCGcUGCUUCGCGAAugG---------------CGGCG- -5'
28012 5' -58 NC_005887.1 + 34938 0.72 0.236338
Target:  5'- aGGCgGCGGCG-GGUGCg-ACCGUgGCg -3'
miRNA:   3'- -CCGgCGCUGCuUCGCGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 28718 0.72 0.242509
Target:  5'- uGCUGCucGGCuGAGUGCg-GCCGCCGCg -3'
miRNA:   3'- cCGGCG--CUGcUUCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 16833 0.72 0.223809
Target:  5'- -cCCGCGAUGGAGCGCgacaUcauccgcgaggugUACCGCgGCg -3'
miRNA:   3'- ccGGCGCUGCUUCGCG----A-------------AUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 3617 0.72 0.224392
Target:  5'- aGGCCGCG-C--AGCGCUU-CgGCCGUg -3'
miRNA:   3'- -CCGGCGCuGcuUCGCGAAuGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 39644 0.72 0.242509
Target:  5'- cGUCGCG-CGGcucGGcCGCUUGCCGcCCGUa -3'
miRNA:   3'- cCGGCGCuGCU---UC-GCGAAUGGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.