miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 9180 0.75 0.150316
Target:  5'- cGGCCGCuACGAAuGCaCgaagcACCGCCGCg -3'
miRNA:   3'- -CCGGCGcUGCUU-CGcGaa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6990 0.75 0.135069
Target:  5'- aGGcCCGCGugGugccGGGCGUgaagcucguggccgGCCGCCGCg -3'
miRNA:   3'- -CC-GGCGCugC----UUCGCGaa------------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 40860 0.75 0.138456
Target:  5'- cGGCCGCGccGCGcGAGCGCc-GCaCGCCGUc -3'
miRNA:   3'- -CCGGCGC--UGC-UUCGCGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 2207 0.75 0.150316
Target:  5'- cGGCgagCGCGGCGcgcAGCGCgcACCGCaCGCu -3'
miRNA:   3'- -CCG---GCGCUGCu--UCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 312 0.75 0.134327
Target:  5'- aGGCCGCGGugcgcgcguacacCGAGgaaguGCGCgaGCCGUCGCa -3'
miRNA:   3'- -CCGGCGCU-------------GCUU-----CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5422 0.75 0.15447
Target:  5'- cGCCGCaGCGAccGGCGCgaccaCGCCGCc -3'
miRNA:   3'- cCGGCGcUGCU--UCGCGaaug-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 12600 0.75 0.146263
Target:  5'- cGGCCGCGACGcucGGCGU--GCUGaCGCa -3'
miRNA:   3'- -CCGGCGCUGCu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 21275 0.75 0.146263
Target:  5'- cGGCgGCGGCGuauGCGCUgcUGgCGUCGCc -3'
miRNA:   3'- -CCGgCGCUGCuu-CGCGA--AUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 633 0.75 0.146263
Target:  5'- aGCCGCGAUGaAAGCGCgcggcgAgCGCaCGCg -3'
miRNA:   3'- cCGGCGCUGC-UUCGCGaa----UgGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 2908 0.75 0.142311
Target:  5'- cGGCCGCcGCGAA-CGac-GCCGCCGCc -3'
miRNA:   3'- -CCGGCGcUGCUUcGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2464 0.75 0.142311
Target:  5'- cGCCGuCGACGAGGCGCUga-CGCgGa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCGAaugGCGgCg -5'
28012 5' -58 NC_005887.1 + 5763 0.75 0.138456
Target:  5'- aGGCCGCGA--AGGCGCUgGCCGCgaaGUg -3'
miRNA:   3'- -CCGGCGCUgcUUCGCGAaUGGCGg--CG- -5'
28012 5' -58 NC_005887.1 + 17826 0.74 0.167563
Target:  5'- cGGCCGCG-CGugaUGCUUACCGUCGa -3'
miRNA:   3'- -CCGGCGCuGCuucGCGAAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 19077 0.74 0.162651
Target:  5'- gGGCUGCGgcaaccgccACGAGcugcgccuuuugcGCGCcgACCGCCGCc -3'
miRNA:   3'- -CCGGCGC---------UGCUU-------------CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 39408 0.74 0.158728
Target:  5'- uGGUCGCGGCGGugccgcGGCGCUUGCgcaGCUugGCg -3'
miRNA:   3'- -CCGGCGCUGCU------UCGCGAAUGg--CGG--CG- -5'
28012 5' -58 NC_005887.1 + 7641 0.74 0.176837
Target:  5'- cGCCGCGcacCGcAAGCGCgacgACgGCCGCc -3'
miRNA:   3'- cCGGCGCu--GC-UUCGCGaa--UGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 26424 0.74 0.158728
Target:  5'- cGGCCGCG-CGGGaacGCGCgcUGCaGCCGCg -3'
miRNA:   3'- -CCGGCGCuGCUU---CGCGa-AUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 16936 0.74 0.163092
Target:  5'- cGGgCGCGAUGcguGAGCGCUUcaACCG-CGCg -3'
miRNA:   3'- -CCgGCGCUGC---UUCGCGAA--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 745 0.74 0.158728
Target:  5'- gGGCCGCGcCGGccgcCGCaccuggGCCGCCGCu -3'
miRNA:   3'- -CCGGCGCuGCUuc--GCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 407 0.74 0.172144
Target:  5'- cGCCGCGAaGAcGCGCcgcGCCGcCCGCu -3'
miRNA:   3'- cCGGCGCUgCUuCGCGaa-UGGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.