Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 2567 | 0.67 | 0.432079 |
Target: 5'- cGCgCGCaACGAucGGCGCgag-CGCCGCg -3' miRNA: 3'- cCG-GCGcUGCU--UCGCGaaugGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2908 | 0.75 | 0.142311 |
Target: 5'- cGGCCGCcGCGAA-CGac-GCCGCCGCc -3' miRNA: 3'- -CCGGCGcUGCUUcGCgaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2935 | 0.71 | 0.248813 |
Target: 5'- aGCUGCG-C-AAGCGCcgcggcACCGCCGCg -3' miRNA: 3'- cCGGCGCuGcUUCGCGaa----UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2956 | 0.67 | 0.45137 |
Target: 5'- cGGUCGCGACcacGGuUGC--GCCGCCGg -3' miRNA: 3'- -CCGGCGCUGcu-UC-GCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 3131 | 0.67 | 0.432079 |
Target: 5'- aGGCCGUGugGAAcGaCGUcaucgacUACCugauGCCGCg -3' miRNA: 3'- -CCGGCGCugCUU-C-GCGa------AUGG----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 3133 | 0.68 | 0.404067 |
Target: 5'- -aCUGCGcaagGCGAAGgGCUUGaCGCUGCa -3' miRNA: 3'- ccGGCGC----UGCUUCgCGAAUgGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 3617 | 0.72 | 0.224392 |
Target: 5'- aGGCCGCG-C--AGCGCUU-CgGCCGUg -3' miRNA: 3'- -CCGGCGCuGcuUCGCGAAuGgCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 3716 | 0.68 | 0.37723 |
Target: 5'- aGCCGCGcgccgaccGCGAuccGCGCaagcuggACgGCCGCa -3' miRNA: 3'- cCGGCGC--------UGCUu--CGCGaa-----UGgCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4194 | 0.7 | 0.289508 |
Target: 5'- -aCCGCGAcCGAAGUGCUgcagCGCgCGCa -3' miRNA: 3'- ccGGCGCU-GCUUCGCGAaug-GCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4237 | 0.66 | 0.543382 |
Target: 5'- uGCuCGCGcCGA--CGCUcgGCCGCaCGCa -3' miRNA: 3'- cCG-GCGCuGCUucGCGAa-UGGCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4478 | 0.66 | 0.511883 |
Target: 5'- uGCCGCGAaggugccgaaCGgcGCGCgcAUCGCgCGUc -3' miRNA: 3'- cCGGCGCU----------GCuuCGCGaaUGGCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4583 | 0.72 | 0.236338 |
Target: 5'- aGCCGC--CGAGGCGCagGCCG-CGCa -3' miRNA: 3'- cCGGCGcuGCUUCGCGaaUGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4636 | 0.71 | 0.271262 |
Target: 5'- uGGCCgccgGCGcgaucaaggaucucaGCGAcGCGCagACCGCUGCg -3' miRNA: 3'- -CCGG----CGC---------------UGCUuCGCGaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4781 | 0.67 | 0.461192 |
Target: 5'- cGCCGCGGCuc--CGCgaGCCGCCa- -3' miRNA: 3'- cCGGCGCUGcuucGCGaaUGGCGGcg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4800 | 0.73 | 0.202038 |
Target: 5'- aGGCCGUGcucGCGGAucucGCGCaguuCUGCCGCg -3' miRNA: 3'- -CCGGCGC---UGCUU----CGCGaau-GGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4854 | 0.66 | 0.532806 |
Target: 5'- -aCUGCGGCGAucaaGGaaCUgACCGCCGCc -3' miRNA: 3'- ccGGCGCUGCU----UCgcGAaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 4884 | 0.7 | 0.327268 |
Target: 5'- cGCuCGCGACGAuGGuCGCcgaggGCCGgCGCg -3' miRNA: 3'- cCG-GCGCUGCU-UC-GCGaa---UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5010 | 0.66 | 0.532806 |
Target: 5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3' miRNA: 3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5017 | 0.68 | 0.413276 |
Target: 5'- cGCC-CGcCGAGGCGCagACCGaaGCc -3' miRNA: 3'- cCGGcGCuGCUUCGCGaaUGGCggCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5094 | 0.66 | 0.529647 |
Target: 5'- gGGCUGUcgaucuaccuggacGACGAGGUGCUcGCCaagcucggcauGaCCGCg -3' miRNA: 3'- -CCGGCG--------------CUGCUUCGCGAaUGG-----------C-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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