miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 2567 0.67 0.432079
Target:  5'- cGCgCGCaACGAucGGCGCgag-CGCCGCg -3'
miRNA:   3'- cCG-GCGcUGCU--UCGCGaaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2908 0.75 0.142311
Target:  5'- cGGCCGCcGCGAA-CGac-GCCGCCGCc -3'
miRNA:   3'- -CCGGCGcUGCUUcGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2935 0.71 0.248813
Target:  5'- aGCUGCG-C-AAGCGCcgcggcACCGCCGCg -3'
miRNA:   3'- cCGGCGCuGcUUCGCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2956 0.67 0.45137
Target:  5'- cGGUCGCGACcacGGuUGC--GCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGcu-UC-GCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 3131 0.67 0.432079
Target:  5'- aGGCCGUGugGAAcGaCGUcaucgacUACCugauGCCGCg -3'
miRNA:   3'- -CCGGCGCugCUU-C-GCGa------AUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 3133 0.68 0.404067
Target:  5'- -aCUGCGcaagGCGAAGgGCUUGaCGCUGCa -3'
miRNA:   3'- ccGGCGC----UGCUUCgCGAAUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 3617 0.72 0.224392
Target:  5'- aGGCCGCG-C--AGCGCUU-CgGCCGUg -3'
miRNA:   3'- -CCGGCGCuGcuUCGCGAAuGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 3716 0.68 0.37723
Target:  5'- aGCCGCGcgccgaccGCGAuccGCGCaagcuggACgGCCGCa -3'
miRNA:   3'- cCGGCGC--------UGCUu--CGCGaa-----UGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 4194 0.7 0.289508
Target:  5'- -aCCGCGAcCGAAGUGCUgcagCGCgCGCa -3'
miRNA:   3'- ccGGCGCU-GCUUCGCGAaug-GCG-GCG- -5'
28012 5' -58 NC_005887.1 + 4237 0.66 0.543382
Target:  5'- uGCuCGCGcCGA--CGCUcgGCCGCaCGCa -3'
miRNA:   3'- cCG-GCGCuGCUucGCGAa-UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 4478 0.66 0.511883
Target:  5'- uGCCGCGAaggugccgaaCGgcGCGCgcAUCGCgCGUc -3'
miRNA:   3'- cCGGCGCU----------GCuuCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 4583 0.72 0.236338
Target:  5'- aGCCGC--CGAGGCGCagGCCG-CGCa -3'
miRNA:   3'- cCGGCGcuGCUUCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 4636 0.71 0.271262
Target:  5'- uGGCCgccgGCGcgaucaaggaucucaGCGAcGCGCagACCGCUGCg -3'
miRNA:   3'- -CCGG----CGC---------------UGCUuCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4781 0.67 0.461192
Target:  5'- cGCCGCGGCuc--CGCgaGCCGCCa- -3'
miRNA:   3'- cCGGCGCUGcuucGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 4800 0.73 0.202038
Target:  5'- aGGCCGUGcucGCGGAucucGCGCaguuCUGCCGCg -3'
miRNA:   3'- -CCGGCGC---UGCUU----CGCGaau-GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4854 0.66 0.532806
Target:  5'- -aCUGCGGCGAucaaGGaaCUgACCGCCGCc -3'
miRNA:   3'- ccGGCGCUGCU----UCgcGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4884 0.7 0.327268
Target:  5'- cGCuCGCGACGAuGGuCGCcgaggGCCGgCGCg -3'
miRNA:   3'- cCG-GCGCUGCU-UC-GCGaa---UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 5010 0.66 0.532806
Target:  5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3'
miRNA:   3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5017 0.68 0.413276
Target:  5'- cGCC-CGcCGAGGCGCagACCGaaGCc -3'
miRNA:   3'- cCGGcGCuGCUUCGCGaaUGGCggCG- -5'
28012 5' -58 NC_005887.1 + 5094 0.66 0.529647
Target:  5'- gGGCUGUcgaucuaccuggacGACGAGGUGCUcGCCaagcucggcauGaCCGCg -3'
miRNA:   3'- -CCGGCG--------------CUGCUUCGCGAaUGG-----------C-GGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.