miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 312 0.75 0.134327
Target:  5'- aGGCCGCGGugcgcgcguacacCGAGgaaguGCGCgaGCCGUCGCa -3'
miRNA:   3'- -CCGGCGCU-------------GCUU-----CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 341 0.7 0.296777
Target:  5'- cGCCGCGGCGAcacucgacgugGGcCGCagGCCguGCUGCu -3'
miRNA:   3'- cCGGCGCUGCU-----------UC-GCGaaUGG--CGGCG- -5'
28012 5' -58 NC_005887.1 + 407 0.74 0.172144
Target:  5'- cGCCGCGAaGAcGCGCcgcGCCGcCCGCu -3'
miRNA:   3'- cCGGCGCUgCUuCGCGaa-UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 521 0.7 0.319433
Target:  5'- uGGUCGaucUGAAcGCGUcgGCCGCCGCg -3'
miRNA:   3'- -CCGGCgcuGCUU-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 550 0.77 0.101977
Target:  5'- cGCCGCGcCGGauacAGCGCgaagACCGCCGg -3'
miRNA:   3'- cCGGCGCuGCU----UCGCGaa--UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 633 0.75 0.146263
Target:  5'- aGCCGCGAUGaAAGCGCgcggcgAgCGCaCGCg -3'
miRNA:   3'- cCGGCGCUGC-UUCGCGaa----UgGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 692 0.73 0.191093
Target:  5'- cGGCuCGCcaacguaGACGAAGCGUg---CGCCGCg -3'
miRNA:   3'- -CCG-GCG-------CUGCUUCGCGaaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 745 0.74 0.158728
Target:  5'- gGGCCGCGcCGGccgcCGCaccuggGCCGCCGCu -3'
miRNA:   3'- -CCGGCGCuGCUuc--GCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 842 0.66 0.515
Target:  5'- cGGCCGCGAaGAaagccaaGGUGCccgUggacgcguggcccgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUgCU-------UCGCGa--A---------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 1481 0.71 0.255252
Target:  5'- cGCCGaCGGCGugcGGCGCUcGCgCGgCGCg -3'
miRNA:   3'- cCGGC-GCUGCu--UCGCGAaUG-GCgGCG- -5'
28012 5' -58 NC_005887.1 + 1629 0.67 0.471125
Target:  5'- gGGCgGCGAccuCGAAGUcgucuucgaucgGCUccUGCCaGCCGUg -3'
miRNA:   3'- -CCGgCGCU---GCUUCG------------CGA--AUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 1796 0.68 0.394988
Target:  5'- cGGCCGCuaccCGAAG-GacgUGCCGCCGa -3'
miRNA:   3'- -CCGGCGcu--GCUUCgCga-AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 1986 0.67 0.481165
Target:  5'- cGCgCGCGACGgcG-GC--ACgGCCGCg -3'
miRNA:   3'- cCG-GCGCUGCuuCgCGaaUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 2164 0.71 0.261827
Target:  5'- uGGCCgGCGGCGAuuCcCUucgUGCCGUCGCg -3'
miRNA:   3'- -CCGG-CGCUGCUucGcGA---AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2190 0.67 0.465152
Target:  5'- cGGCCGCGGUGAucgggcAGCGCaaaccgaugggcgGCUGgCGCa -3'
miRNA:   3'- -CCGGCGCUGCU------UCGCGaa-----------UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 2207 0.75 0.150316
Target:  5'- cGGCgagCGCGGCGcgcAGCGCgcACCGCaCGCu -3'
miRNA:   3'- -CCG---GCGCUGCu--UCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 2291 0.69 0.340912
Target:  5'- cGCCG-GACGAucggaacgguaucgGGCGUagGCCGgCCGCc -3'
miRNA:   3'- cCGGCgCUGCU--------------UCGCGaaUGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 2370 0.7 0.327268
Target:  5'- aGGCCGaCGACGAAGacacgcCGUUccggauccugcgUGCCGCUGg -3'
miRNA:   3'- -CCGGC-GCUGCUUC------GCGA------------AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 2464 0.75 0.142311
Target:  5'- cGCCGuCGACGAGGCGCUga-CGCgGa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCGAaugGCGgCg -5'
28012 5' -58 NC_005887.1 + 2535 0.67 0.460204
Target:  5'- cGCUGCG-CaAGGCGCUgucgGgcggcuacugcuuCCGCCGCa -3'
miRNA:   3'- cCGGCGCuGcUUCGCGAa---U-------------GGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.