miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 34270 0.73 0.191602
Target:  5'- cGCuCGCGGCuu-GCGCaUGCCGUCGCc -3'
miRNA:   3'- cCG-GCGCUGcuuCGCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 12600 0.75 0.146263
Target:  5'- cGGCCGCGACGcucGGCGU--GCUGaCGCa -3'
miRNA:   3'- -CCGGCGCUGCu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 21275 0.75 0.146263
Target:  5'- cGGCgGCGGCGuauGCGCUgcUGgCGUCGCc -3'
miRNA:   3'- -CCGgCGCUGCuu-CGCGA--AUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5422 0.75 0.15447
Target:  5'- cGCCGCaGCGAccGGCGCgaccaCGCCGCc -3'
miRNA:   3'- cCGGCGcUGCU--UCGCGaaug-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 26424 0.74 0.158728
Target:  5'- cGGCCGCG-CGGGaacGCGCgcUGCaGCCGCg -3'
miRNA:   3'- -CCGGCGCuGCUU---CGCGa-AUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 16936 0.74 0.163092
Target:  5'- cGGgCGCGAUGcguGAGCGCUUcaACCG-CGCg -3'
miRNA:   3'- -CCgGCGCUGC---UUCGCGAA--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 39776 0.74 0.167563
Target:  5'- uGGUCGCGGCGcucGCGCcgAUCGuuGCg -3'
miRNA:   3'- -CCGGCGCUGCuu-CGCGaaUGGCggCG- -5'
28012 5' -58 NC_005887.1 + 407 0.74 0.172144
Target:  5'- cGCCGCGAaGAcGCGCcgcGCCGcCCGCu -3'
miRNA:   3'- cCGGCGCUgCUuCGCGaa-UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 7398 0.73 0.191093
Target:  5'- cGCCGaCGACGAucgccacGGuCGCacccGCCGCCGCc -3'
miRNA:   3'- cCGGC-GCUGCU-------UC-GCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 633 0.75 0.146263
Target:  5'- aGCCGCGAUGaAAGCGCgcggcgAgCGCaCGCg -3'
miRNA:   3'- cCGGCGCUGC-UUCGCGaa----UgGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 2908 0.75 0.142311
Target:  5'- cGGCCGCcGCGAA-CGac-GCCGCCGCc -3'
miRNA:   3'- -CCGGCGcUGCUUcGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2464 0.75 0.142311
Target:  5'- cGCCGuCGACGAGGCGCUga-CGCgGa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCGAaugGCGgCg -5'
28012 5' -58 NC_005887.1 + 18132 0.78 0.083692
Target:  5'- cGCaacCGGCGAAGCGCggGCCGCCGa -3'
miRNA:   3'- cCGgc-GCUGCUUCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 12111 0.78 0.090086
Target:  5'- uGGCCGCG-CaGAAGCGCcaggacgagcagGCCGCCGUc -3'
miRNA:   3'- -CCGGCGCuG-CUUCGCGaa----------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 550 0.77 0.101977
Target:  5'- cGCCGCGcCGGauacAGCGCgaagACCGCCGg -3'
miRNA:   3'- cCGGCGCuGCU----UCGCGaa--UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 27606 0.77 0.104878
Target:  5'- cGUCGUGuCGAAgGCGCUgaUACCGUCGCg -3'
miRNA:   3'- cCGGCGCuGCUU-CGCGA--AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41592 0.77 0.110916
Target:  5'- cGGCCaGCGGCGGcccaGGUGCggcgGCCGgCGCg -3'
miRNA:   3'- -CCGG-CGCUGCU----UCGCGaa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 39463 0.76 0.117278
Target:  5'- gGGCCGCGugccUGAaaAGCGCgUGuuGCCGCu -3'
miRNA:   3'- -CCGGCGCu---GCU--UCGCGaAUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 312 0.75 0.134327
Target:  5'- aGGCCGCGGugcgcgcguacacCGAGgaaguGCGCgaGCCGUCGCa -3'
miRNA:   3'- -CCGGCGCU-------------GCUU-----CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5763 0.75 0.138456
Target:  5'- aGGCCGCGA--AGGCGCUgGCCGCgaaGUg -3'
miRNA:   3'- -CCGGCGCUgcUUCGCGAaUGGCGg--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.