Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 34270 | 0.73 | 0.191602 |
Target: 5'- cGCuCGCGGCuu-GCGCaUGCCGUCGCc -3' miRNA: 3'- cCG-GCGCUGcuuCGCGaAUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 12600 | 0.75 | 0.146263 |
Target: 5'- cGGCCGCGACGcucGGCGU--GCUGaCGCa -3' miRNA: 3'- -CCGGCGCUGCu--UCGCGaaUGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 21275 | 0.75 | 0.146263 |
Target: 5'- cGGCgGCGGCGuauGCGCUgcUGgCGUCGCc -3' miRNA: 3'- -CCGgCGCUGCuu-CGCGA--AUgGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5422 | 0.75 | 0.15447 |
Target: 5'- cGCCGCaGCGAccGGCGCgaccaCGCCGCc -3' miRNA: 3'- cCGGCGcUGCU--UCGCGaaug-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 26424 | 0.74 | 0.158728 |
Target: 5'- cGGCCGCG-CGGGaacGCGCgcUGCaGCCGCg -3' miRNA: 3'- -CCGGCGCuGCUU---CGCGa-AUGgCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 16936 | 0.74 | 0.163092 |
Target: 5'- cGGgCGCGAUGcguGAGCGCUUcaACCG-CGCg -3' miRNA: 3'- -CCgGCGCUGC---UUCGCGAA--UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39776 | 0.74 | 0.167563 |
Target: 5'- uGGUCGCGGCGcucGCGCcgAUCGuuGCg -3' miRNA: 3'- -CCGGCGCUGCuu-CGCGaaUGGCggCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 407 | 0.74 | 0.172144 |
Target: 5'- cGCCGCGAaGAcGCGCcgcGCCGcCCGCu -3' miRNA: 3'- cCGGCGCUgCUuCGCGaa-UGGC-GGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 7398 | 0.73 | 0.191093 |
Target: 5'- cGCCGaCGACGAucgccacGGuCGCacccGCCGCCGCc -3' miRNA: 3'- cCGGC-GCUGCU-------UC-GCGaa--UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 633 | 0.75 | 0.146263 |
Target: 5'- aGCCGCGAUGaAAGCGCgcggcgAgCGCaCGCg -3' miRNA: 3'- cCGGCGCUGC-UUCGCGaa----UgGCG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2908 | 0.75 | 0.142311 |
Target: 5'- cGGCCGCcGCGAA-CGac-GCCGCCGCc -3' miRNA: 3'- -CCGGCGcUGCUUcGCgaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 2464 | 0.75 | 0.142311 |
Target: 5'- cGCCGuCGACGAGGCGCUga-CGCgGa -3' miRNA: 3'- cCGGC-GCUGCUUCGCGAaugGCGgCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 18132 | 0.78 | 0.083692 |
Target: 5'- cGCaacCGGCGAAGCGCggGCCGCCGa -3' miRNA: 3'- cCGgc-GCUGCUUCGCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 12111 | 0.78 | 0.090086 |
Target: 5'- uGGCCGCG-CaGAAGCGCcaggacgagcagGCCGCCGUc -3' miRNA: 3'- -CCGGCGCuG-CUUCGCGaa----------UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 550 | 0.77 | 0.101977 |
Target: 5'- cGCCGCGcCGGauacAGCGCgaagACCGCCGg -3' miRNA: 3'- cCGGCGCuGCU----UCGCGaa--UGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27606 | 0.77 | 0.104878 |
Target: 5'- cGUCGUGuCGAAgGCGCUgaUACCGUCGCg -3' miRNA: 3'- cCGGCGCuGCUU-CGCGA--AUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 41592 | 0.77 | 0.110916 |
Target: 5'- cGGCCaGCGGCGGcccaGGUGCggcgGCCGgCGCg -3' miRNA: 3'- -CCGG-CGCUGCU----UCGCGaa--UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39463 | 0.76 | 0.117278 |
Target: 5'- gGGCCGCGugccUGAaaAGCGCgUGuuGCCGCu -3' miRNA: 3'- -CCGGCGCu---GCU--UCGCGaAUggCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 312 | 0.75 | 0.134327 |
Target: 5'- aGGCCGCGGugcgcgcguacacCGAGgaaguGCGCgaGCCGUCGCa -3' miRNA: 3'- -CCGGCGCU-------------GCUU-----CGCGaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5763 | 0.75 | 0.138456 |
Target: 5'- aGGCCGCGA--AGGCGCUgGCCGCgaaGUg -3' miRNA: 3'- -CCGGCGCUgcUUCGCGAaUGGCGg--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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