Results 1 - 20 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 33635 | 1.14 | 0.000201 |
Target: 5'- uGGCCGCGACGAAGCGCUUACCGCCGCg -3' miRNA: 3'- -CCGGCGCUGCUUCGCGAAUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8475 | 0.86 | 0.02485 |
Target: 5'- -aCgGCGACGGAGCGCUgucgGCUGCCGCa -3' miRNA: 3'- ccGgCGCUGCUUCGCGAa---UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8710 | 0.81 | 0.056079 |
Target: 5'- cGCCGCGGCGGuaAGCGCU--UCGUCGCg -3' miRNA: 3'- cCGGCGCUGCU--UCGCGAauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 18931 | 0.79 | 0.070548 |
Target: 5'- cGGCUGCGACGAGcugaucgacGCGCUgcugcgGCUGCCaGCg -3' miRNA: 3'- -CCGGCGCUGCUU---------CGCGAa-----UGGCGG-CG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 12141 | 0.79 | 0.076851 |
Target: 5'- aGGCCGCGACGcGGCGUggcugGCCGgCGa -3' miRNA: 3'- -CCGGCGCUGCuUCGCGaa---UGGCgGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 18132 | 0.78 | 0.083692 |
Target: 5'- cGCaacCGGCGAAGCGCggGCCGCCGa -3' miRNA: 3'- cCGgc-GCUGCUUCGCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 23426 | 0.78 | 0.086098 |
Target: 5'- cGGCCGCuGCGAgauucggugAGCGCUgcggGCUGCCGg -3' miRNA: 3'- -CCGGCGcUGCU---------UCGCGAa---UGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 13953 | 0.78 | 0.088571 |
Target: 5'- cGGCUGCGACGu-GCGCgugACgacaGCCGCg -3' miRNA: 3'- -CCGGCGCUGCuuCGCGaa-UGg---CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 12111 | 0.78 | 0.090086 |
Target: 5'- uGGCCGCG-CaGAAGCGCcaggacgagcagGCCGCCGUc -3' miRNA: 3'- -CCGGCGCuG-CUUCGCGaa----------UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 16830 | 0.77 | 0.096399 |
Target: 5'- cGGCgGCGACGAuuauGcCGCcacCCGCCGCg -3' miRNA: 3'- -CCGgCGCUGCUu---C-GCGaauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 550 | 0.77 | 0.101977 |
Target: 5'- cGCCGCGcCGGauacAGCGCgaagACCGCCGg -3' miRNA: 3'- cCGGCGCuGCU----UCGCGaa--UGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 17452 | 0.77 | 0.104878 |
Target: 5'- cGGCUGCuGCGAagaagaccgAGCGCgcggcaucgGCCGCCGCc -3' miRNA: 3'- -CCGGCGcUGCU---------UCGCGaa-------UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27606 | 0.77 | 0.104878 |
Target: 5'- cGUCGUGuCGAAgGCGCUgaUACCGUCGCg -3' miRNA: 3'- cCGGCGCuGCUU-CGCGA--AUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 10614 | 0.77 | 0.104878 |
Target: 5'- gGGgCGCaGCGAAGCGUUUGCagcaggcagaaCGCCGCa -3' miRNA: 3'- -CCgGCGcUGCUUCGCGAAUG-----------GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 23781 | 0.77 | 0.106061 |
Target: 5'- cGCCGCGACGAgcaugucgcccgcgaAGC-CggcGCCGCCGCc -3' miRNA: 3'- cCGGCGCUGCU---------------UCGcGaa-UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 41592 | 0.77 | 0.110916 |
Target: 5'- cGGCCaGCGGCGGcccaGGUGCggcgGCCGgCGCg -3' miRNA: 3'- -CCGG-CGCUGCU----UCGCGaa--UGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8632 | 0.76 | 0.114055 |
Target: 5'- cGCCGCGAUcGAGCaGaucgACCGCCGCg -3' miRNA: 3'- cCGGCGCUGcUUCG-Cgaa-UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39463 | 0.76 | 0.117278 |
Target: 5'- gGGCCGCGugccUGAaaAGCGCgUGuuGCCGCu -3' miRNA: 3'- -CCGGCGCu---GCU--UCGCGaAUggCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 31027 | 0.76 | 0.120585 |
Target: 5'- cGGCCGUcGCGGuugcGGCGCUcGCUGCCGa -3' miRNA: 3'- -CCGGCGcUGCU----UCGCGAaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 7496 | 0.76 | 0.123978 |
Target: 5'- aGGCCGCGAUcAAGuCGgUUGCCGUCGa -3' miRNA: 3'- -CCGGCGCUGcUUC-GCgAAUGGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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