miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 33635 1.14 0.000201
Target:  5'- uGGCCGCGACGAAGCGCUUACCGCCGCg -3'
miRNA:   3'- -CCGGCGCUGCUUCGCGAAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8475 0.86 0.02485
Target:  5'- -aCgGCGACGGAGCGCUgucgGCUGCCGCa -3'
miRNA:   3'- ccGgCGCUGCUUCGCGAa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8710 0.81 0.056079
Target:  5'- cGCCGCGGCGGuaAGCGCU--UCGUCGCg -3'
miRNA:   3'- cCGGCGCUGCU--UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 18931 0.79 0.070548
Target:  5'- cGGCUGCGACGAGcugaucgacGCGCUgcugcgGCUGCCaGCg -3'
miRNA:   3'- -CCGGCGCUGCUU---------CGCGAa-----UGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 12141 0.79 0.076851
Target:  5'- aGGCCGCGACGcGGCGUggcugGCCGgCGa -3'
miRNA:   3'- -CCGGCGCUGCuUCGCGaa---UGGCgGCg -5'
28012 5' -58 NC_005887.1 + 18132 0.78 0.083692
Target:  5'- cGCaacCGGCGAAGCGCggGCCGCCGa -3'
miRNA:   3'- cCGgc-GCUGCUUCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 23426 0.78 0.086098
Target:  5'- cGGCCGCuGCGAgauucggugAGCGCUgcggGCUGCCGg -3'
miRNA:   3'- -CCGGCGcUGCU---------UCGCGAa---UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 13953 0.78 0.088571
Target:  5'- cGGCUGCGACGu-GCGCgugACgacaGCCGCg -3'
miRNA:   3'- -CCGGCGCUGCuuCGCGaa-UGg---CGGCG- -5'
28012 5' -58 NC_005887.1 + 12111 0.78 0.090086
Target:  5'- uGGCCGCG-CaGAAGCGCcaggacgagcagGCCGCCGUc -3'
miRNA:   3'- -CCGGCGCuG-CUUCGCGaa----------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 16830 0.77 0.096399
Target:  5'- cGGCgGCGACGAuuauGcCGCcacCCGCCGCg -3'
miRNA:   3'- -CCGgCGCUGCUu---C-GCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 550 0.77 0.101977
Target:  5'- cGCCGCGcCGGauacAGCGCgaagACCGCCGg -3'
miRNA:   3'- cCGGCGCuGCU----UCGCGaa--UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 17452 0.77 0.104878
Target:  5'- cGGCUGCuGCGAagaagaccgAGCGCgcggcaucgGCCGCCGCc -3'
miRNA:   3'- -CCGGCGcUGCU---------UCGCGaa-------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27606 0.77 0.104878
Target:  5'- cGUCGUGuCGAAgGCGCUgaUACCGUCGCg -3'
miRNA:   3'- cCGGCGCuGCUU-CGCGA--AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 10614 0.77 0.104878
Target:  5'- gGGgCGCaGCGAAGCGUUUGCagcaggcagaaCGCCGCa -3'
miRNA:   3'- -CCgGCGcUGCUUCGCGAAUG-----------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 23781 0.77 0.106061
Target:  5'- cGCCGCGACGAgcaugucgcccgcgaAGC-CggcGCCGCCGCc -3'
miRNA:   3'- cCGGCGCUGCU---------------UCGcGaa-UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41592 0.77 0.110916
Target:  5'- cGGCCaGCGGCGGcccaGGUGCggcgGCCGgCGCg -3'
miRNA:   3'- -CCGG-CGCUGCU----UCGCGaa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 8632 0.76 0.114055
Target:  5'- cGCCGCGAUcGAGCaGaucgACCGCCGCg -3'
miRNA:   3'- cCGGCGCUGcUUCG-Cgaa-UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 39463 0.76 0.117278
Target:  5'- gGGCCGCGugccUGAaaAGCGCgUGuuGCCGCu -3'
miRNA:   3'- -CCGGCGCu---GCU--UCGCGaAUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 31027 0.76 0.120585
Target:  5'- cGGCCGUcGCGGuugcGGCGCUcGCUGCCGa -3'
miRNA:   3'- -CCGGCGcUGCU----UCGCGAaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 7496 0.76 0.123978
Target:  5'- aGGCCGCGAUcAAGuCGgUUGCCGUCGa -3'
miRNA:   3'- -CCGGCGCUGcUUC-GCgAAUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.