miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 4478 0.66 0.511883
Target:  5'- uGCCGCGAaggugccgaaCGgcGCGCgcAUCGCgCGUc -3'
miRNA:   3'- cCGGCGCU----------GCuuCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 34898 0.66 0.530699
Target:  5'- cGCUGCccuucucGACGAGgaacgucGCGCUgugcggaacuUGCCGUCGCc -3'
miRNA:   3'- cCGGCG-------CUGCUU-------CGCGA----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 35337 0.66 0.522304
Target:  5'- cGCCGCGGCGGccGGCcacgaGCUU-CaCGCCcgGCa -3'
miRNA:   3'- cCGGCGCUGCU--UCG-----CGAAuG-GCGG--CG- -5'
28012 5' -58 NC_005887.1 + 18979 0.66 0.522304
Target:  5'- gGGCaCGCGGCagcauGGCGCagucuaACCaaagGCCGCg -3'
miRNA:   3'- -CCG-GCGCUGcu---UCGCGaa----UGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 40643 0.66 0.511883
Target:  5'- aGGCacUGACGAGcGCGCgccgaucACCGgCCGCa -3'
miRNA:   3'- -CCGgcGCUGCUU-CGCGaa-----UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 15591 0.66 0.501549
Target:  5'- cGCCGaagcugaGACGcAGCGCacgGgCGUCGCg -3'
miRNA:   3'- cCGGCg------CUGCuUCGCGaa-UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5484 0.66 0.501549
Target:  5'- aGGCCGaUGGCGcAGCaCcgGCCGCaGCa -3'
miRNA:   3'- -CCGGC-GCUGCuUCGcGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 23976 0.66 0.511883
Target:  5'- cGGCCcacugcucgagcGCGAgGcGGCGCUcgggaaucucCUGCCGCa -3'
miRNA:   3'- -CCGG------------CGCUgCuUCGCGAau--------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 23245 0.66 0.505672
Target:  5'- aGCgGCGGCGGucGGCGCgcaaaagGCgcagcucguggcgguUGCCGCa -3'
miRNA:   3'- cCGgCGCUGCU--UCGCGaa-----UG---------------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 31011 0.66 0.511883
Target:  5'- --gCGUGGCGcGGCGCagGCCacuauucgcagGCCGCg -3'
miRNA:   3'- ccgGCGCUGCuUCGCGaaUGG-----------CGGCG- -5'
28012 5' -58 NC_005887.1 + 13070 0.66 0.522304
Target:  5'- aGGCCGaucCGugGAacgcGGCGCUcgAUCGCgGa -3'
miRNA:   3'- -CCGGC---GCugCU----UCGCGAa-UGGCGgCg -5'
28012 5' -58 NC_005887.1 + 26829 0.66 0.526495
Target:  5'- uGCgCGUGcGCGAgcgGGCGCgucugccgguagccgUUGCCGCCGg -3'
miRNA:   3'- cCG-GCGC-UGCU---UCGCG---------------AAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 28476 0.66 0.501549
Target:  5'- gGGCCGCuucagcucGACGAAGUagacGCgcGCCGgCGg -3'
miRNA:   3'- -CCGGCG--------CUGCUUCG----CGaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 17985 0.66 0.501549
Target:  5'- cGGCCGCaccGACuGGaacAGC-CUgaccgaaugggACCGCCGCg -3'
miRNA:   3'- -CCGGCG---CUG-CU---UCGcGAa----------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 842 0.66 0.515
Target:  5'- cGGCCGCGAaGAaagccaaGGUGCccgUggacgcguggcccgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUgCU-------UCGCGa--A---------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 5094 0.66 0.529647
Target:  5'- gGGCUGUcgaucuaccuggacGACGAGGUGCUcGCCaagcucggcauGaCCGCg -3'
miRNA:   3'- -CCGGCG--------------CUGCUUCGCGAaUGG-----------C-GGCG- -5'
28012 5' -58 NC_005887.1 + 14008 0.66 0.505672
Target:  5'- cGCCGCG-CGccuccgcaaccgccGGCGC--GCCGCCGg -3'
miRNA:   3'- cCGGCGCuGCu-------------UCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 36992 0.66 0.491308
Target:  5'- aGCuCGcCGGCGAGcacGCGCagGCCGUaCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUU---CGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 11994 0.66 0.489271
Target:  5'- aGGUCGCGcccACGuugcagacauccGGCGCacGCaCGCCGCu -3'
miRNA:   3'- -CCGGCGC---UGCu-----------UCGCGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 11115 0.66 0.510846
Target:  5'- uGCgCGCGAagcuggcCGAGGCGCcgUGgCGgCGCa -3'
miRNA:   3'- cCG-GCGCU-------GCUUCGCGa-AUgGCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.