Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 18979 | 0.66 | 0.522304 |
Target: 5'- gGGCaCGCGGCagcauGGCGCagucuaACCaaagGCCGCg -3' miRNA: 3'- -CCG-GCGCUGcu---UCGCGaa----UGG----CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27978 | 0.66 | 0.522304 |
Target: 5'- cGCCgaGCGGCGAcucgaacaGGUGCccgGCaCGCUGCu -3' miRNA: 3'- cCGG--CGCUGCU--------UCGCGaa-UG-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5484 | 0.66 | 0.501549 |
Target: 5'- aGGCCGaUGGCGcAGCaCcgGCCGCaGCa -3' miRNA: 3'- -CCGGC-GCUGCuUCGcGaaUGGCGgCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39092 | 0.66 | 0.543382 |
Target: 5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3' miRNA: 3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 11994 | 0.66 | 0.489271 |
Target: 5'- aGGUCGCGcccACGuugcagacauccGGCGCacGCaCGCCGCu -3' miRNA: 3'- -CCGGCGC---UGCu-----------UCGCGaaUG-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14994 | 0.66 | 0.522304 |
Target: 5'- uGCCGaCGcuCGucuGCGC--GCCGCUGCg -3' miRNA: 3'- cCGGC-GCu-GCuu-CGCGaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 28476 | 0.66 | 0.501549 |
Target: 5'- gGGCCGCuucagcucGACGAAGUagacGCgcGCCGgCGg -3' miRNA: 3'- -CCGGCG--------CUGCUUCG----CGaaUGGCgGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 32737 | 0.66 | 0.543382 |
Target: 5'- gGGUagCGCGGCGcucgcGUGCgcGCCGgCGCg -3' miRNA: 3'- -CCG--GCGCUGCuu---CGCGaaUGGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 11881 | 0.66 | 0.543382 |
Target: 5'- gGGCCGCGuc---GCGC--ACCGCCu- -3' miRNA: 3'- -CCGGCGCugcuuCGCGaaUGGCGGcg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14008 | 0.66 | 0.505672 |
Target: 5'- cGCCGCG-CGccuccgcaaccgccGGCGC--GCCGCCGg -3' miRNA: 3'- cCGGCGCuGCu-------------UCGCGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 11115 | 0.66 | 0.510846 |
Target: 5'- uGCgCGCGAagcuggcCGAGGCGCcgUGgCGgCGCa -3' miRNA: 3'- cCG-GCGCU-------GCUUCGCGa-AUgGCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 15770 | 0.66 | 0.543382 |
Target: 5'- aGGCCGCGgccGCGAAgGCGCagaagcagAUCGauGCg -3' miRNA: 3'- -CCGGCGC---UGCUU-CGCGaa------UGGCggCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 38054 | 0.66 | 0.532806 |
Target: 5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3' miRNA: 3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27647 | 0.66 | 0.532806 |
Target: 5'- cGCCGCGccCGGccCGC---CCGCCGCg -3' miRNA: 3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 842 | 0.66 | 0.515 |
Target: 5'- cGGCCGCGAaGAaagccaaGGUGCccgUggacgcguggcccgcGCCGCCGg -3' miRNA: 3'- -CCGGCGCUgCU-------UCGCGa--A---------------UGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 31011 | 0.66 | 0.511883 |
Target: 5'- --gCGUGGCGcGGCGCagGCCacuauucgcagGCCGCg -3' miRNA: 3'- ccgGCGCUGCuUCGCGaaUGG-----------CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 15591 | 0.66 | 0.501549 |
Target: 5'- cGCCGaagcugaGACGcAGCGCacgGgCGUCGCg -3' miRNA: 3'- cCGGCg------CUGCuUCGCGaa-UgGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 10890 | 0.66 | 0.543382 |
Target: 5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3' miRNA: 3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5010 | 0.66 | 0.532806 |
Target: 5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3' miRNA: 3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 24974 | 0.66 | 0.543382 |
Target: 5'- cGGCCGCGAgggacagguCGggGUagUUGCCGa-GCg -3' miRNA: 3'- -CCGGCGCU---------GCuuCGcgAAUGGCggCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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