miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 11881 0.66 0.543382
Target:  5'- gGGCCGCGuc---GCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCugcuuCGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 41942 0.66 0.511883
Target:  5'- gGGCggCGCGGCGcgucuucgcGGCGCUUGCCcGUcuuuuCGCa -3'
miRNA:   3'- -CCG--GCGCUGCu--------UCGCGAAUGG-CG-----GCG- -5'
28012 5' -58 NC_005887.1 + 6198 0.66 0.501549
Target:  5'- cGCCGCGACGAGGaa---ACCGgCGa -3'
miRNA:   3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 33635 1.14 0.000201
Target:  5'- uGGCCGCGACGAAGCGCUUACCGCCGCg -3'
miRNA:   3'- -CCGGCGCUGCUUCGCGAAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27647 0.66 0.532806
Target:  5'- cGCCGCGccCGGccCGC---CCGCCGCg -3'
miRNA:   3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 7149 0.66 0.532806
Target:  5'- uGCUGCGcaACGAAuCGCc--CCGCCGUu -3'
miRNA:   3'- cCGGCGC--UGCUUcGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5010 0.66 0.532806
Target:  5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3'
miRNA:   3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 38054 0.66 0.532806
Target:  5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3'
miRNA:   3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5'
28012 5' -58 NC_005887.1 + 14994 0.66 0.522304
Target:  5'- uGCCGaCGcuCGucuGCGC--GCCGCUGCg -3'
miRNA:   3'- cCGGC-GCu-GCuu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 30804 0.66 0.511883
Target:  5'- cGCCGCG-CGcuGCGC--GCCgaGCUGCu -3'
miRNA:   3'- cCGGCGCuGCuuCGCGaaUGG--CGGCG- -5'
28012 5' -58 NC_005887.1 + 6676 0.66 0.522304
Target:  5'- cGGCCGC--CGAucGCGC--GCUGCUGUa -3'
miRNA:   3'- -CCGGCGcuGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27978 0.66 0.522304
Target:  5'- cGCCgaGCGGCGAcucgaacaGGUGCccgGCaCGCUGCu -3'
miRNA:   3'- cCGG--CGCUGCU--------UCGCGaa-UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 39092 0.66 0.543382
Target:  5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3'
miRNA:   3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 31439 0.66 0.522304
Target:  5'- aGGCCGgcCGACGucaucuGCGCcgGCUGCagguGCa -3'
miRNA:   3'- -CCGGC--GCUGCuu----CGCGaaUGGCGg---CG- -5'
28012 5' -58 NC_005887.1 + 10890 0.66 0.543382
Target:  5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5'
28012 5' -58 NC_005887.1 + 4854 0.66 0.532806
Target:  5'- -aCUGCGGCGAucaaGGaaCUgACCGCCGCc -3'
miRNA:   3'- ccGGCGCUGCU----UCgcGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 17338 0.66 0.522304
Target:  5'- uGGCCgGCGGCcgccGGCGCgaGCUGaCGCu -3'
miRNA:   3'- -CCGG-CGCUGcu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 41099 0.66 0.511883
Target:  5'- aGCUauGCGACGuuuucgcGUGCUgAgCGCCGCg -3'
miRNA:   3'- cCGG--CGCUGCuu-----CGCGAaUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 14768 0.66 0.539143
Target:  5'- cGCU-CGACGgcGCGCUcgcgcuguacuuCCGCUGCg -3'
miRNA:   3'- cCGGcGCUGCuuCGCGAau----------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 11067 0.66 0.532806
Target:  5'- cGGUCGagcuCGACGAGGCGaucgacGCgGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCUUCGCgaa---UGgCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.