miRNA display CGI


Results 21 - 40 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 11881 0.66 0.543382
Target:  5'- gGGCCGCGuc---GCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCugcuuCGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 5245 0.67 0.481165
Target:  5'- cGGCCGCGcgaucgcCGAGGCug-UGCuCGcCCGCu -3'
miRNA:   3'- -CCGGCGCu------GCUUCGcgaAUG-GC-GGCG- -5'
28012 5' -58 NC_005887.1 + 11325 0.67 0.481165
Target:  5'- aGCCGCGGCcu-GCGaauagugGCCugcGCCGCg -3'
miRNA:   3'- cCGGCGCUGcuuCGCgaa----UGG---CGGCG- -5'
28012 5' -58 NC_005887.1 + 41528 0.66 0.501549
Target:  5'- cGGCCGCGAuCGcgcGAGCaugGCUguugAUCGCgauCGCg -3'
miRNA:   3'- -CCGGCGCU-GC---UUCG---CGAa---UGGCG---GCG- -5'
28012 5' -58 NC_005887.1 + 8398 0.66 0.522304
Target:  5'- cGCCGCacGCGAcGUGCUcGCCGagCGCc -3'
miRNA:   3'- cCGGCGc-UGCUuCGCGAaUGGCg-GCG- -5'
28012 5' -58 NC_005887.1 + 35725 0.67 0.471125
Target:  5'- aGCCaUGcCGAGGCGUUgucggauccggUGCCGCCaGCg -3'
miRNA:   3'- cCGGcGCuGCUUCGCGA-----------AUGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 33357 0.67 0.471125
Target:  5'- cGUCGCGcuuguGCGcAGCaGCUUcugcguaggguaGCCGCCGUg -3'
miRNA:   3'- cCGGCGC-----UGCuUCG-CGAA------------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 38054 0.66 0.532806
Target:  5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3'
miRNA:   3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5'
28012 5' -58 NC_005887.1 + 35081 0.67 0.481165
Target:  5'- cGGCCGgggcCGAUGucGCGgUcGCUGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCuuCGCgAaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 25054 0.66 0.491308
Target:  5'- cGCCGaacCGGCGuuuGCGCgcgcGgCGCCGCc -3'
miRNA:   3'- cCGGC---GCUGCuu-CGCGaa--UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 11067 0.66 0.532806
Target:  5'- cGGUCGagcuCGACGAGGCGaucgacGCgGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCUUCGCgaa---UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 7149 0.66 0.532806
Target:  5'- uGCUGCGcaACGAAuCGCc--CCGCCGUu -3'
miRNA:   3'- cCGGCGC--UGCUUcGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 4781 0.67 0.461192
Target:  5'- cGCCGCGGCuc--CGCgaGCCGCCa- -3'
miRNA:   3'- cCGGCGCUGcuucGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 22603 0.67 0.471125
Target:  5'- aGGUagaGCGAC--AGCGUcgUGCCGCCa- -3'
miRNA:   3'- -CCGg--CGCUGcuUCGCGa-AUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 26943 0.67 0.481165
Target:  5'- uGCgCGuCGACGAucCGCUgcCCGCgCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUucGCGAauGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 17338 0.66 0.522304
Target:  5'- uGGCCgGCGGCcgccGGCGCgaGCUGaCGCu -3'
miRNA:   3'- -CCGG-CGCUGcu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 6676 0.66 0.522304
Target:  5'- cGGCCGC--CGAucGCGC--GCUGCUGUa -3'
miRNA:   3'- -CCGGCGcuGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27647 0.66 0.532806
Target:  5'- cGCCGCGccCGGccCGC---CCGCCGCg -3'
miRNA:   3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 12818 0.66 0.492328
Target:  5'- aGGCCGuCGcgcGCGAcGUGCUguucuacaacgcgcCCGCCGUc -3'
miRNA:   3'- -CCGGC-GC---UGCUuCGCGAau------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 28793 0.67 0.481165
Target:  5'- cGGCCuGCucgGGCGGcAGCGCaucGCCGaUCGCa -3'
miRNA:   3'- -CCGG-CG---CUGCU-UCGCGaa-UGGC-GGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.