miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 25054 0.66 0.491308
Target:  5'- cGCCGaacCGGCGuuuGCGCgcgcGgCGCCGCc -3'
miRNA:   3'- cCGGC---GCUGCuu-CGCGaa--UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6198 0.66 0.501549
Target:  5'- cGCCGCGACGAGGaa---ACCGgCGa -3'
miRNA:   3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 27978 0.66 0.522304
Target:  5'- cGCCgaGCGGCGAcucgaacaGGUGCccgGCaCGCUGCu -3'
miRNA:   3'- cCGG--CGCUGCU--------UCGCGaa-UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 14768 0.66 0.539143
Target:  5'- cGCU-CGACGgcGCGCUcgcgcuguacuuCCGCUGCg -3'
miRNA:   3'- cCGGcGCUGCuuCGCGAau----------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5902 0.67 0.471125
Target:  5'- cGCUGCGGgcuggcCGAAGgGCaagaaGCCGgCCGCg -3'
miRNA:   3'- cCGGCGCU------GCUUCgCGaa---UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 1986 0.67 0.481165
Target:  5'- cGCgCGCGACGgcG-GC--ACgGCCGCg -3'
miRNA:   3'- cCG-GCGCUGCuuCgCGaaUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 41942 0.66 0.511883
Target:  5'- gGGCggCGCGGCGcgucuucgcGGCGCUUGCCcGUcuuuuCGCa -3'
miRNA:   3'- -CCG--GCGCUGCu--------UCGCGAAUGG-CG-----GCG- -5'
28012 5' -58 NC_005887.1 + 10890 0.66 0.543382
Target:  5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3'
miRNA:   3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5'
28012 5' -58 NC_005887.1 + 8070 0.67 0.481165
Target:  5'- aGCCGCacGGCGAcggcauGCGCaaGCCGCgaGCg -3'
miRNA:   3'- cCGGCG--CUGCUu-----CGCGaaUGGCGg-CG- -5'
28012 5' -58 NC_005887.1 + 39092 0.66 0.543382
Target:  5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3'
miRNA:   3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 41099 0.66 0.511883
Target:  5'- aGCUauGCGACGuuuucgcGUGCUgAgCGCCGCg -3'
miRNA:   3'- cCGG--CGCUGCuu-----CGCGAaUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 37744 0.66 0.488255
Target:  5'- cGCCGCGGCGAGcaucuguugcaucuGCGCggccUGCgccucggcggcuUGCUGCg -3'
miRNA:   3'- cCGGCGCUGCUU--------------CGCGa---AUG------------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 31439 0.66 0.522304
Target:  5'- aGGCCGgcCGACGucaucuGCGCcgGCUGCagguGCa -3'
miRNA:   3'- -CCGGC--GCUGCuu----CGCGaaUGGCGg---CG- -5'
28012 5' -58 NC_005887.1 + 14994 0.66 0.522304
Target:  5'- uGCCGaCGcuCGucuGCGC--GCCGCUGCg -3'
miRNA:   3'- cCGGC-GCu-GCuu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5010 0.66 0.532806
Target:  5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3'
miRNA:   3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27647 0.66 0.532806
Target:  5'- cGCCGCGccCGGccCGC---CCGCCGCg -3'
miRNA:   3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 14200 0.67 0.471125
Target:  5'- aGUCgGCGuGCGAGGUGUUgcagGUCGCCGCg -3'
miRNA:   3'- cCGG-CGC-UGCUUCGCGAa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 1629 0.67 0.471125
Target:  5'- gGGCgGCGAccuCGAAGUcgucuucgaucgGCUccUGCCaGCCGUg -3'
miRNA:   3'- -CCGgCGCU---GCUUCG------------CGA--AUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 30459 0.67 0.472124
Target:  5'- cGCCGUGAaguugccGGCGCUgccgaacgacgaaagACCGCCGa -3'
miRNA:   3'- cCGGCGCUgcu----UCGCGAa--------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 26943 0.67 0.481165
Target:  5'- uGCgCGuCGACGAucCGCUgcCCGCgCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUucGCGAauGGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.