miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 11067 0.66 0.532806
Target:  5'- cGGUCGagcuCGACGAGGCGaucgacGCgGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCUUCGCgaa---UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 4781 0.67 0.461192
Target:  5'- cGCCGCGGCuc--CGCgaGCCGCCa- -3'
miRNA:   3'- cCGGCGCUGcuucGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 13466 0.68 0.404067
Target:  5'- aGCCGuCGACGGu-CGCUaccccgauUACCGgCGCa -3'
miRNA:   3'- cCGGC-GCUGCUucGCGA--------AUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 20073 0.68 0.407735
Target:  5'- aGGCCGaCGA-GAAauccgaucgccugcuGCGCgccACCGUCGCu -3'
miRNA:   3'- -CCGGC-GCUgCUU---------------CGCGaa-UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 22603 0.67 0.471125
Target:  5'- aGGUagaGCGAC--AGCGUcgUGCCGCCa- -3'
miRNA:   3'- -CCGg--CGCUGcuUCGCGa-AUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 17338 0.66 0.522304
Target:  5'- uGGCCgGCGGCcgccGGCGCgaGCUGaCGCu -3'
miRNA:   3'- -CCGG-CGCUGcu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 7149 0.66 0.532806
Target:  5'- uGCUGCGcaACGAAuCGCc--CCGCCGUu -3'
miRNA:   3'- cCGGCGC--UGCUUcGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 27647 0.66 0.532806
Target:  5'- cGCCGCGccCGGccCGC---CCGCCGCg -3'
miRNA:   3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 12818 0.66 0.492328
Target:  5'- aGGCCGuCGcgcGCGAcGUGCUguucuacaacgcgcCCGCCGUc -3'
miRNA:   3'- -CCGGC-GC---UGCUuCGCGAau------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5245 0.67 0.481165
Target:  5'- cGGCCGCGcgaucgcCGAGGCug-UGCuCGcCCGCu -3'
miRNA:   3'- -CCGGCGCu------GCUUCGcgaAUG-GC-GGCG- -5'
28012 5' -58 NC_005887.1 + 26943 0.67 0.481165
Target:  5'- uGCgCGuCGACGAucCGCUgcCCGCgCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUucGCGAauGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 6198 0.66 0.501549
Target:  5'- cGCCGCGACGAGGaa---ACCGgCGa -3'
miRNA:   3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 4854 0.66 0.532806
Target:  5'- -aCUGCGGCGAucaaGGaaCUgACCGCCGCc -3'
miRNA:   3'- ccGGCGCUGCU----UCgcGAaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5499 0.67 0.45137
Target:  5'- aGGCgCGCGucGCGAuccAGCGCaagGCUGUCGa -3'
miRNA:   3'- -CCG-GCGC--UGCU---UCGCGaa-UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 2956 0.67 0.45137
Target:  5'- cGGUCGCGACcacGGuUGC--GCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGcu-UC-GCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 1629 0.67 0.471125
Target:  5'- gGGCgGCGAccuCGAAGUcgucuucgaucgGCUccUGCCaGCCGUg -3'
miRNA:   3'- -CCGgCGCU---GCUUCG------------CGA--AUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 28967 0.68 0.413276
Target:  5'- cGCCGCGcCGGccuucAGCGCgagcgccAUCGCCGg -3'
miRNA:   3'- cCGGCGCuGCU-----UCGCGaa-----UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 33635 1.14 0.000201
Target:  5'- uGGCCGCGACGAAGCGCUUACCGCCGCg -3'
miRNA:   3'- -CCGGCGCUGCUUCGCGAAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 9900 0.68 0.404067
Target:  5'- cGCCGCgcaGugGcuGCGCaaccugAUCGCCGCc -3'
miRNA:   3'- cCGGCG---CugCuuCGCGaa----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 14113 0.67 0.431127
Target:  5'- cGCCGCucGCGAAgcugcgcGCGCUgcucaaaACCGCCGa -3'
miRNA:   3'- cCGGCGc-UGCUU-------CGCGAa------UGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.