Results 41 - 60 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28012 | 5' | -58 | NC_005887.1 | + | 23706 | 0.67 | 0.471125 |
Target: 5'- cGGCUggaacaGCGuCGAcAGCaGCggGCCGCCGa -3' miRNA: 3'- -CCGG------CGCuGCU-UCG-CGaaUGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 41942 | 0.66 | 0.511883 |
Target: 5'- gGGCggCGCGGCGcgucuucgcGGCGCUUGCCcGUcuuuuCGCa -3' miRNA: 3'- -CCG--GCGCUGCu--------UCGCGAAUGG-CG-----GCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 10890 | 0.66 | 0.543382 |
Target: 5'- uGCUGaCGACGGAGCGg--ACC-UCGCa -3' miRNA: 3'- cCGGC-GCUGCUUCGCgaaUGGcGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 33357 | 0.67 | 0.471125 |
Target: 5'- cGUCGCGcuuguGCGcAGCaGCUUcugcguaggguaGCCGCCGUg -3' miRNA: 3'- cCGGCGC-----UGCuUCG-CGAA------------UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 39092 | 0.66 | 0.543382 |
Target: 5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3' miRNA: 3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 29437 | 0.68 | 0.404067 |
Target: 5'- cGCuCGCGAaacCGgcGUGCUgGCuCGCCGUg -3' miRNA: 3'- cCG-GCGCU---GCuuCGCGAaUG-GCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 27647 | 0.66 | 0.532806 |
Target: 5'- cGCCGCGccCGGccCGC---CCGCCGCg -3' miRNA: 3'- cCGGCGCu-GCUucGCGaauGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8308 | 0.68 | 0.41235 |
Target: 5'- cGCCGauugGACGAGuGCGCUcgaaaugUACaaGCCGCa -3' miRNA: 3'- cCGGCg---CUGCUU-CGCGA-------AUGg-CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14113 | 0.67 | 0.431127 |
Target: 5'- cGCCGCucGCGAAgcugcgcGCGCUgcucaaaACCGCCGa -3' miRNA: 3'- cCGGCGc-UGCUU-------CGCGAa------UGGCGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 26098 | 0.67 | 0.45137 |
Target: 5'- aGCUcgGCGACGGugcccguGCGCUcGCCgGCCGg -3' miRNA: 3'- cCGG--CGCUGCUu------CGCGAaUGG-CGGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 6106 | 0.67 | 0.45137 |
Target: 5'- cGGCCGCGcACGAgcuGGCGaagUGgUGCCu- -3' miRNA: 3'- -CCGGCGC-UGCU---UCGCga-AUgGCGGcg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14200 | 0.67 | 0.471125 |
Target: 5'- aGUCgGCGuGCGAGGUGUUgcagGUCGCCGCg -3' miRNA: 3'- cCGG-CGC-UGCUUCGCGAa---UGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 1629 | 0.67 | 0.471125 |
Target: 5'- gGGCgGCGAccuCGAAGUcgucuucgaucgGCUccUGCCaGCCGUg -3' miRNA: 3'- -CCGgCGCU---GCUUCG------------CGA--AUGG-CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 11325 | 0.67 | 0.481165 |
Target: 5'- aGCCGCGGCcu-GCGaauagugGCCugcGCCGCg -3' miRNA: 3'- cCGGCGCUGcuuCGCgaa----UGG---CGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 8070 | 0.67 | 0.481165 |
Target: 5'- aGCCGCacGGCGAcggcauGCGCaaGCCGCgaGCg -3' miRNA: 3'- cCGGCG--CUGCUu-----CGCGaaUGGCGg-CG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 25054 | 0.66 | 0.491308 |
Target: 5'- cGCCGaacCGGCGuuuGCGCgcgcGgCGCCGCc -3' miRNA: 3'- cCGGC---GCUGCuu-CGCGaa--UgGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 6198 | 0.66 | 0.501549 |
Target: 5'- cGCCGCGACGAGGaa---ACCGgCGa -3' miRNA: 3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 31439 | 0.66 | 0.522304 |
Target: 5'- aGGCCGgcCGACGucaucuGCGCcgGCUGCagguGCa -3' miRNA: 3'- -CCGGC--GCUGCuu----CGCGaaUGGCGg---CG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 14994 | 0.66 | 0.522304 |
Target: 5'- uGCCGaCGcuCGucuGCGC--GCCGCUGCg -3' miRNA: 3'- cCGGC-GCu-GCuu-CGCGaaUGGCGGCG- -5' |
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28012 | 5' | -58 | NC_005887.1 | + | 5010 | 0.66 | 0.532806 |
Target: 5'- aGGauGCGGCGAccgaugccAGUGCcggcGCUGCUGCg -3' miRNA: 3'- -CCggCGCUGCU--------UCGCGaa--UGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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