miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 5149 0.67 0.45137
Target:  5'- uGCC-CGACGucGGCGC--GCCGCUGa -3'
miRNA:   3'- cCGGcGCUGCu-UCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 5245 0.67 0.481165
Target:  5'- cGGCCGCGcgaucgcCGAGGCug-UGCuCGcCCGCu -3'
miRNA:   3'- -CCGGCGCu------GCUUCGcgaAUG-GC-GGCG- -5'
28012 5' -58 NC_005887.1 + 5422 0.75 0.15447
Target:  5'- cGCCGCaGCGAccGGCGCgaccaCGCCGCc -3'
miRNA:   3'- cCGGCGcUGCU--UCGCGaaug-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 5484 0.66 0.501549
Target:  5'- aGGCCGaUGGCGcAGCaCcgGCCGCaGCa -3'
miRNA:   3'- -CCGGC-GCUGCuUCGcGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 5499 0.67 0.45137
Target:  5'- aGGCgCGCGucGCGAuccAGCGCaagGCUGUCGa -3'
miRNA:   3'- -CCG-GCGC--UGCU---UCGCGaa-UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 5763 0.75 0.138456
Target:  5'- aGGCCGCGA--AGGCGCUgGCCGCgaaGUg -3'
miRNA:   3'- -CCGGCGCUgcUUCGCGAaUGGCGg--CG- -5'
28012 5' -58 NC_005887.1 + 5835 0.7 0.319433
Target:  5'- gGGUCGCGaaggGCGAAGCggaGCUcACCG-CGCu -3'
miRNA:   3'- -CCGGCGC----UGCUUCG---CGAaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 5902 0.67 0.471125
Target:  5'- cGCUGCGGgcuggcCGAAGgGCaagaaGCCGgCCGCg -3'
miRNA:   3'- cCGGCGCU------GCUUCgCGaa---UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 6019 0.71 0.280267
Target:  5'- cGGCCuauaccuggaucgaGUG-CGcGGCGUcgACCGCCGCg -3'
miRNA:   3'- -CCGG--------------CGCuGCuUCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6106 0.67 0.45137
Target:  5'- cGGCCGCGcACGAgcuGGCGaagUGgUGCCu- -3'
miRNA:   3'- -CCGGCGC-UGCU---UCGCga-AUgGCGGcg -5'
28012 5' -58 NC_005887.1 + 6198 0.66 0.501549
Target:  5'- cGCCGCGACGAGGaa---ACCGgCGa -3'
miRNA:   3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 6440 0.69 0.343362
Target:  5'- cGGCCGCGccgagauCGAAGUGCgcgaccugaagUACgGgCGCg -3'
miRNA:   3'- -CCGGCGCu------GCUUCGCGa----------AUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 6676 0.66 0.522304
Target:  5'- cGGCCGC--CGAucGCGC--GCUGCUGUa -3'
miRNA:   3'- -CCGGCGcuGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6781 0.71 0.248813
Target:  5'- aGGCCGUGuGCccGGCGCU---CGCCGCa -3'
miRNA:   3'- -CCGGCGC-UGcuUCGCGAaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6827 0.69 0.341727
Target:  5'- cGCUGacuuCGAAGCGCUUGCCGacgauauuuacaCGCa -3'
miRNA:   3'- cCGGCgcu-GCUUCGCGAAUGGCg-----------GCG- -5'
28012 5' -58 NC_005887.1 + 6990 0.75 0.135069
Target:  5'- aGGcCCGCGugGugccGGGCGUgaagcucguggccgGCCGCCGCg -3'
miRNA:   3'- -CC-GGCGCugC----UUCGCGaa------------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 7149 0.66 0.532806
Target:  5'- uGCUGCGcaACGAAuCGCc--CCGCCGUu -3'
miRNA:   3'- cCGGCGC--UGCUUcGCGaauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 7398 0.73 0.191093
Target:  5'- cGCCGaCGACGAucgccacGGuCGCacccGCCGCCGCc -3'
miRNA:   3'- cCGGC-GCUGCU-------UC-GCGaa--UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 7496 0.76 0.123978
Target:  5'- aGGCCGCGAUcAAGuCGgUUGCCGUCGa -3'
miRNA:   3'- -CCGGCGCUGcUUC-GCgAAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 7641 0.74 0.176837
Target:  5'- cGCCGCGcacCGcAAGCGCgacgACgGCCGCc -3'
miRNA:   3'- cCGGCGCu--GC-UUCGCGaa--UGgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.