miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 34938 0.72 0.236338
Target:  5'- aGGCgGCGGCG-GGUGCg-ACCGUgGCg -3'
miRNA:   3'- -CCGgCGCUGCuUCGCGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 34898 0.66 0.530699
Target:  5'- cGCUGCccuucucGACGAGgaacgucGCGCUgugcggaacuUGCCGUCGCc -3'
miRNA:   3'- cCGGCG-------CUGCUU-------CGCGA----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34705 0.7 0.327268
Target:  5'- cGGCCGU--CGucGCGCUUGCgGUgCGCg -3'
miRNA:   3'- -CCGGCGcuGCuuCGCGAAUGgCG-GCG- -5'
28012 5' -58 NC_005887.1 + 34634 0.7 0.288788
Target:  5'- cGCCGUucgcgucGACGAGGCGCgccgGCuUGCCGg -3'
miRNA:   3'- cCGGCG-------CUGCUUCGCGaa--UG-GCGGCg -5'
28012 5' -58 NC_005887.1 + 34270 0.73 0.191602
Target:  5'- cGCuCGCGGCuu-GCGCaUGCCGUCGCc -3'
miRNA:   3'- cCG-GCGCUGcuuCGCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 34246 0.68 0.394988
Target:  5'- cGCCuCGGCG-AGCGCggcgaGCUGCgCGCg -3'
miRNA:   3'- cCGGcGCUGCuUCGCGaa---UGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 33868 0.67 0.481165
Target:  5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3'
miRNA:   3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 33635 1.14 0.000201
Target:  5'- uGGCCGCGACGAAGCGCUUACCGCCGCg -3'
miRNA:   3'- -CCGGCGCUGCUUCGCGAAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 33357 0.67 0.471125
Target:  5'- cGUCGCGcuuguGCGcAGCaGCUUcugcguaggguaGCCGCCGUg -3'
miRNA:   3'- cCGGCGC-----UGCuUCG-CGAA------------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 33160 0.67 0.441665
Target:  5'- uGCCGCGGCG--GUGCUUcgugcauucguaGCgGCCGg -3'
miRNA:   3'- cCGGCGCUGCuuCGCGAA------------UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 33073 0.71 0.282378
Target:  5'- uGCgGCGuCGccGUGCcgACCGCCGUg -3'
miRNA:   3'- cCGgCGCuGCuuCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 32737 0.66 0.543382
Target:  5'- gGGUagCGCGGCGcucgcGUGCgcGCCGgCGCg -3'
miRNA:   3'- -CCG--GCGCUGCuu---CGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 32504 0.71 0.25266
Target:  5'- cGGCgCGCGGCGuucagguuggccGCGCUgACCgGCUGCg -3'
miRNA:   3'- -CCG-GCGCUGCuu----------CGCGAaUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 32437 0.68 0.394988
Target:  5'- uGGCCgGCGGCGAucagguuGCGCa-GCCaCUGCg -3'
miRNA:   3'- -CCGG-CGCUGCUu------CGCGaaUGGcGGCG- -5'
28012 5' -58 NC_005887.1 + 31439 0.66 0.522304
Target:  5'- aGGCCGgcCGACGucaucuGCGCcgGCUGCagguGCa -3'
miRNA:   3'- -CCGGC--GCUGCuu----CGCGaaUGGCGg---CG- -5'
28012 5' -58 NC_005887.1 + 31027 0.76 0.120585
Target:  5'- cGGCCGUcGCGGuugcGGCGCUcGCUGCCGa -3'
miRNA:   3'- -CCGGCGcUGCU----UCGCGAaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 31011 0.66 0.511883
Target:  5'- --gCGUGGCGcGGCGCagGCCacuauucgcagGCCGCg -3'
miRNA:   3'- ccgGCGCUGCuUCGCGaaUGG-----------CGGCG- -5'
28012 5' -58 NC_005887.1 + 30929 0.69 0.335244
Target:  5'- cGGCCuGUugcgcucaGACGAugccuuggcGGCGCcgGCCGCCaGCg -3'
miRNA:   3'- -CCGG-CG--------CUGCU---------UCGCGaaUGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 30804 0.66 0.511883
Target:  5'- cGCCGCG-CGcuGCGC--GCCgaGCUGCu -3'
miRNA:   3'- cCGGCGCuGCuuCGCGaaUGG--CGGCG- -5'
28012 5' -58 NC_005887.1 + 30795 0.68 0.37723
Target:  5'- uGCgCGCGAUcaauGGCGCgcACCGCgGCc -3'
miRNA:   3'- cCG-GCGCUGcu--UCGCGaaUGGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.