miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 39823 0.68 0.394988
Target:  5'- uGCUG-GAUaAAGCGCgacggGCCGCCGUc -3'
miRNA:   3'- cCGGCgCUGcUUCGCGaa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 39776 0.74 0.167563
Target:  5'- uGGUCGCGGCGcucGCGCcgAUCGuuGCg -3'
miRNA:   3'- -CCGGCGCUGCuu-CGCGaaUGGCggCG- -5'
28012 5' -58 NC_005887.1 + 39644 0.72 0.242509
Target:  5'- cGUCGCG-CGGcucGGcCGCUUGCCGcCCGUa -3'
miRNA:   3'- cCGGCGCuGCU---UC-GCGAAUGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 39463 0.76 0.117278
Target:  5'- gGGCCGCGugccUGAaaAGCGCgUGuuGCCGCu -3'
miRNA:   3'- -CCGGCGCu---GCU--UCGCGaAUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 39408 0.74 0.158728
Target:  5'- uGGUCGCGGCGGugccgcGGCGCUUGCgcaGCUugGCg -3'
miRNA:   3'- -CCGGCGCUGCU------UCGCGAAUGg--CGG--CG- -5'
28012 5' -58 NC_005887.1 + 39092 0.66 0.543382
Target:  5'- cGCgGCGACGAaguugcgcAGCGCgaGCgG-CGCg -3'
miRNA:   3'- cCGgCGCUGCU--------UCGCGaaUGgCgGCG- -5'
28012 5' -58 NC_005887.1 + 38800 0.68 0.421675
Target:  5'- aGGCCggaauuguucucgGCGAaccaGAGGCGCUgcaucgGCaCGuuGCg -3'
miRNA:   3'- -CCGG-------------CGCUg---CUUCGCGAa-----UG-GCggCG- -5'
28012 5' -58 NC_005887.1 + 38237 0.71 0.261827
Target:  5'- uGGCCGgGAUGGucgAGCGCUcgAUCGacaCGCu -3'
miRNA:   3'- -CCGGCgCUGCU---UCGCGAa-UGGCg--GCG- -5'
28012 5' -58 NC_005887.1 + 38054 0.66 0.532806
Target:  5'- cGGCCuCGGCGAGGaUGUcgACCucGCgCGCg -3'
miRNA:   3'- -CCGGcGCUGCUUC-GCGaaUGG--CG-GCG- -5'
28012 5' -58 NC_005887.1 + 37744 0.66 0.488255
Target:  5'- cGCCGCGGCGAGcaucuguugcaucuGCGCggccUGCgccucggcggcuUGCUGCg -3'
miRNA:   3'- cCGGCGCUGCUU--------------CGCGa---AUG------------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 37108 0.72 0.236338
Target:  5'- aGCCuCGGCGAucGCGCg-GCCGUCGCc -3'
miRNA:   3'- cCGGcGCUGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 36992 0.66 0.491308
Target:  5'- aGCuCGcCGGCGAGcacGCGCagGCCGUaCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUU---CGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 36922 0.72 0.218614
Target:  5'- cGGgCGCGugGucGCGCcgGUCGCUGCg -3'
miRNA:   3'- -CCgGCGCugCuuCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 36839 0.68 0.404067
Target:  5'- uGCUGCGGCc-GGUGCUgcgGCCGgUGCu -3'
miRNA:   3'- cCGGCGCUGcuUCGCGAa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 36395 0.73 0.207985
Target:  5'- cGGCCGCGAUGGuggucugguucauuuGCGC--ACCGCCu- -3'
miRNA:   3'- -CCGGCGCUGCUu--------------CGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 36038 0.67 0.441665
Target:  5'- cGGCgC-CGGCGAGGCGCaaggccucgACgCGCuCGCg -3'
miRNA:   3'- -CCG-GcGCUGCUUCGCGaa-------UG-GCG-GCG- -5'
28012 5' -58 NC_005887.1 + 35882 0.69 0.360018
Target:  5'- -aCCGCGACGccGCGCccgUACUucagGUCGCg -3'
miRNA:   3'- ccGGCGCUGCuuCGCGa--AUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 35725 0.67 0.471125
Target:  5'- aGCCaUGcCGAGGCGUUgucggauccggUGCCGCCaGCg -3'
miRNA:   3'- cCGGcGCuGCUUCGCGA-----------AUGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 35337 0.66 0.522304
Target:  5'- cGCCGCGGCGGccGGCcacgaGCUU-CaCGCCcgGCa -3'
miRNA:   3'- cCGGCGCUGCU--UCG-----CGAAuG-GCGG--CG- -5'
28012 5' -58 NC_005887.1 + 35081 0.67 0.481165
Target:  5'- cGGCCGgggcCGAUGucGCGgUcGCUGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCuuCGCgAaUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.