miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 30641 0.7 0.296777
Target:  5'- uGCgCGCGGCGAAGCGauCUUGCgaCGCCu- -3'
miRNA:   3'- cCG-GCGCUGCUUCGC--GAAUG--GCGGcg -5'
28012 5' -58 NC_005887.1 + 30459 0.67 0.472124
Target:  5'- cGCCGUGAaguugccGGCGCUgccgaacgacgaaagACCGCCGa -3'
miRNA:   3'- cCGGCGCUgcu----UCGCGAa--------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 30435 0.67 0.471125
Target:  5'- aGGCCGaCGuCGggGCgggGCaUGuuGCCGg -3'
miRNA:   3'- -CCGGC-GCuGCuuCG---CGaAUggCGGCg -5'
28012 5' -58 NC_005887.1 + 30246 0.69 0.335244
Target:  5'- aGGUCG-GACacguacAGGCGCUUGCCGuCCGg -3'
miRNA:   3'- -CCGGCgCUGc-----UUCGCGAAUGGC-GGCg -5'
28012 5' -58 NC_005887.1 + 30218 0.73 0.183598
Target:  5'- uGGCgCGCGACGGcggccugcucguccuGGCGCUUcugcGCgGCCaGCa -3'
miRNA:   3'- -CCG-GCGCUGCU---------------UCGCGAA----UGgCGG-CG- -5'
28012 5' -58 NC_005887.1 + 29938 0.7 0.296777
Target:  5'- cGCCGaucucgggauCGACGGugucgAGCGCcgcgaacACCGCCGCg -3'
miRNA:   3'- cCGGC----------GCUGCU-----UCGCGaa-----UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 29770 0.68 0.404067
Target:  5'- cGGCCGgguCGGCGGAcaccauGCGCaUGCCggcgGCCGUc -3'
miRNA:   3'- -CCGGC---GCUGCUU------CGCGaAUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 29759 0.67 0.45137
Target:  5'- uGCC-CGGCGAGcugaucGCGaggAUCGCCGCg -3'
miRNA:   3'- cCGGcGCUGCUU------CGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 29662 0.67 0.45137
Target:  5'- cGCgGCG-CGAgguagcacagcuGGCGCUUGCUuggcaGCUGCa -3'
miRNA:   3'- cCGgCGCuGCU------------UCGCGAAUGG-----CGGCG- -5'
28012 5' -58 NC_005887.1 + 29620 0.71 0.248813
Target:  5'- cGG-CGCGAUcGAGCGCauucUGCUGCUGCg -3'
miRNA:   3'- -CCgGCGCUGcUUCGCGa---AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 29507 0.69 0.366837
Target:  5'- cGGCCuCGACGGcgGGCGCguuguagaacaGCaCGUCGCg -3'
miRNA:   3'- -CCGGcGCUGCU--UCGCGaa---------UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 29437 0.68 0.404067
Target:  5'- cGCuCGCGAaacCGgcGUGCUgGCuCGCCGUg -3'
miRNA:   3'- cCG-GCGCU---GCuuCGCGAaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 29403 0.68 0.404067
Target:  5'- uGCUGUaGCGucGCgGCUUGCUGCgGCa -3'
miRNA:   3'- cCGGCGcUGCuuCG-CGAAUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 29320 0.71 0.281673
Target:  5'- uGGCCGUGugGAucugcucgAGCuGCUUcacggaaGCCGCCu- -3'
miRNA:   3'- -CCGGCGCugCU--------UCG-CGAA-------UGGCGGcg -5'
28012 5' -58 NC_005887.1 + 29187 0.67 0.481165
Target:  5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3'
miRNA:   3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 29111 0.7 0.287354
Target:  5'- cGGUCGCGACGAgccggguuucguacGGCGUUgccucgaugaACaCGCCGUu -3'
miRNA:   3'- -CCGGCGCUGCU--------------UCGCGAa---------UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 28967 0.68 0.413276
Target:  5'- cGCCGCGcCGGccuucAGCGCgagcgccAUCGCCGg -3'
miRNA:   3'- cCGGCGCuGCU-----UCGCGaa-----UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 28931 0.7 0.304188
Target:  5'- cGCCGCucguCGcAGCagcgGCUUGCCGCCGa -3'
miRNA:   3'- cCGGCGcu--GCuUCG----CGAAUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 28793 0.67 0.481165
Target:  5'- cGGCCuGCucgGGCGGcAGCGCaucGCCGaUCGCa -3'
miRNA:   3'- -CCGG-CG---CUGCU-UCGCGaa-UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 28718 0.72 0.242509
Target:  5'- uGCUGCucGGCuGAGUGCg-GCCGCCGCg -3'
miRNA:   3'- cCGGCG--CUGcUUCGCGaaUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.