miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 14885 0.67 0.479148
Target:  5'- --gCGCGGCaGAAuGCGCcagcugcuacggUGCCGCUGCa -3'
miRNA:   3'- ccgGCGCUG-CUU-CGCGa-----------AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 30459 0.67 0.472124
Target:  5'- cGCCGUGAaguugccGGCGCUgccgaacgacgaaagACCGCCGa -3'
miRNA:   3'- cCGGCGCUgcu----UCGCGAa--------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 12720 0.67 0.471125
Target:  5'- uGGUCGCGcagcaGCaGAAuGCGCUcgauCgCGCCGCg -3'
miRNA:   3'- -CCGGCGC-----UG-CUU-CGCGAau--G-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 30435 0.67 0.471125
Target:  5'- aGGCCGaCGuCGggGCgggGCaUGuuGCCGg -3'
miRNA:   3'- -CCGGC-GCuGCuuCG---CGaAUggCGGCg -5'
28012 5' -58 NC_005887.1 + 1629 0.67 0.471125
Target:  5'- gGGCgGCGAccuCGAAGUcgucuucgaucgGCUccUGCCaGCCGUg -3'
miRNA:   3'- -CCGgCGCU---GCUUCG------------CGA--AUGG-CGGCG- -5'
28012 5' -58 NC_005887.1 + 5902 0.67 0.471125
Target:  5'- cGCUGCGGgcuggcCGAAGgGCaagaaGCCGgCCGCg -3'
miRNA:   3'- cCGGCGCU------GCUUCgCGaa---UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 23706 0.67 0.471125
Target:  5'- cGGCUggaacaGCGuCGAcAGCaGCggGCCGCCGa -3'
miRNA:   3'- -CCGG------CGCuGCU-UCG-CGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 14200 0.67 0.471125
Target:  5'- aGUCgGCGuGCGAGGUGUUgcagGUCGCCGCg -3'
miRNA:   3'- cCGG-CGC-UGCUUCGCGAa---UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 22603 0.67 0.471125
Target:  5'- aGGUagaGCGAC--AGCGUcgUGCCGCCa- -3'
miRNA:   3'- -CCGg--CGCUGcuUCGCGa-AUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 35725 0.67 0.471125
Target:  5'- aGCCaUGcCGAGGCGUUgucggauccggUGCCGCCaGCg -3'
miRNA:   3'- cCGGcGCuGCUUCGCGA-----------AUGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 8415 0.67 0.471125
Target:  5'- gGGCCGagcACGAccAG-GC-UAUCGCCGCa -3'
miRNA:   3'- -CCGGCgc-UGCU--UCgCGaAUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8081 0.67 0.471125
Target:  5'- uGGUCGUucACGaAAGCGCgcgcgcaGCuCGCCGCg -3'
miRNA:   3'- -CCGGCGc-UGC-UUCGCGaa-----UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 33357 0.67 0.471125
Target:  5'- cGUCGCGcuuguGCGcAGCaGCUUcugcguaggguaGCCGCCGUg -3'
miRNA:   3'- cCGGCGC-----UGCuUCG-CGAA------------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 2190 0.67 0.465152
Target:  5'- cGGCCGCGGUGAucgggcAGCGCaaaccgaugggcgGCUGgCGCa -3'
miRNA:   3'- -CCGGCGCUGCU------UCGCGaa-----------UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 20525 0.67 0.461192
Target:  5'- uGGCCGUuucauuCGgcGCGCccgGCagCGCCGCg -3'
miRNA:   3'- -CCGGCGcu----GCuuCGCGaa-UG--GCGGCG- -5'
28012 5' -58 NC_005887.1 + 41702 0.67 0.461192
Target:  5'- cGGUCauGCG-CGu-GCGCUcGCCGCgCGCu -3'
miRNA:   3'- -CCGG--CGCuGCuuCGCGAaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 14701 0.67 0.461192
Target:  5'- cGUCGCGGCGGgcgggccgGGCGCggcgAUCG-CGCa -3'
miRNA:   3'- cCGGCGCUGCU--------UCGCGaa--UGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 4781 0.67 0.461192
Target:  5'- cGCCGCGGCuc--CGCgaGCCGCCa- -3'
miRNA:   3'- cCGGCGCUGcuucGCGaaUGGCGGcg -5'
28012 5' -58 NC_005887.1 + 2535 0.67 0.460204
Target:  5'- cGCUGCG-CaAGGCGCUgucgGgcggcuacugcuuCCGCCGCa -3'
miRNA:   3'- cCGGCGCuGcUUCGCGAa---U-------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5149 0.67 0.45137
Target:  5'- uGCC-CGACGucGGCGC--GCCGCUGa -3'
miRNA:   3'- cCGGcGCUGCu-UCGCGaaUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.