miRNA display CGI


Results 81 - 100 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 29662 0.67 0.45137
Target:  5'- cGCgGCG-CGAgguagcacagcuGGCGCUUGCUuggcaGCUGCa -3'
miRNA:   3'- cCGgCGCuGCU------------UCGCGAAUGG-----CGGCG- -5'
28012 5' -58 NC_005887.1 + 5149 0.67 0.45137
Target:  5'- uGCC-CGACGucGGCGC--GCCGCUGa -3'
miRNA:   3'- cCGGcGCUGCu-UCGCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 26098 0.67 0.45137
Target:  5'- aGCUcgGCGACGGugcccguGCGCUcGCCgGCCGg -3'
miRNA:   3'- cCGG--CGCUGCUu------CGCGAaUGG-CGGCg -5'
28012 5' -58 NC_005887.1 + 2956 0.67 0.45137
Target:  5'- cGGUCGCGACcacGGuUGC--GCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGcu-UC-GCGaaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 18795 0.67 0.45137
Target:  5'- cGGCCggcgaugcggGCGGCGucAGCGUacGCUGCCaGCu -3'
miRNA:   3'- -CCGG----------CGCUGCu-UCGCGaaUGGCGG-CG- -5'
28012 5' -58 NC_005887.1 + 6106 0.67 0.45137
Target:  5'- cGGCCGCGcACGAgcuGGCGaagUGgUGCCu- -3'
miRNA:   3'- -CCGGCGC-UGCU---UCGCga-AUgGCGGcg -5'
28012 5' -58 NC_005887.1 + 29759 0.67 0.45137
Target:  5'- uGCC-CGGCGAGcugaucGCGaggAUCGCCGCg -3'
miRNA:   3'- cCGGcGCUGCUU------CGCgaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 25291 0.67 0.450395
Target:  5'- cGGCaUGaCGGCGuccgcccAAGCGU--GCCGCUGCg -3'
miRNA:   3'- -CCG-GC-GCUGC-------UUCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 21551 0.67 0.44263
Target:  5'- cGCUGCaGGCGAccGGCGCaauuacgccauccagUACUGCCGg -3'
miRNA:   3'- cCGGCG-CUGCU--UCGCGa--------------AUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 17054 0.67 0.441665
Target:  5'- cGGCaCGCuugGGCGGA-CGCcgucaUGCCGCUGCu -3'
miRNA:   3'- -CCG-GCG---CUGCUUcGCGa----AUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 36038 0.67 0.441665
Target:  5'- cGGCgC-CGGCGAGGCGCaaggccucgACgCGCuCGCg -3'
miRNA:   3'- -CCG-GcGCUGCUUCGCGaa-------UG-GCG-GCG- -5'
28012 5' -58 NC_005887.1 + 40909 0.67 0.441665
Target:  5'- aGCCGC--CGAAG-GC-UACCGCgCGCg -3'
miRNA:   3'- cCGGCGcuGCUUCgCGaAUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 33160 0.67 0.441665
Target:  5'- uGCCGCGGCG--GUGCUUcgugcauucguaGCgGCCGg -3'
miRNA:   3'- cCGGCGCUGCuuCGCGAA------------UGgCGGCg -5'
28012 5' -58 NC_005887.1 + 25024 0.67 0.432079
Target:  5'- cGGCCGcCGGCcagccgguAGCGCagaACCcauGCCGCa -3'
miRNA:   3'- -CCGGC-GCUGcu------UCGCGaa-UGG---CGGCG- -5'
28012 5' -58 NC_005887.1 + 22782 0.67 0.432079
Target:  5'- uGGCU-CGACGccGGCGCg-GCCGCUGUu -3'
miRNA:   3'- -CCGGcGCUGCu-UCGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 17628 0.67 0.432079
Target:  5'- cGCUGCGcACGAcggucAGCGCcgUGaaGCUGCa -3'
miRNA:   3'- cCGGCGC-UGCU-----UCGCGa-AUggCGGCG- -5'
28012 5' -58 NC_005887.1 + 3131 0.67 0.432079
Target:  5'- aGGCCGUGugGAAcGaCGUcaucgacUACCugauGCCGCg -3'
miRNA:   3'- -CCGGCGCugCUU-C-GCGa------AUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 18393 0.67 0.432079
Target:  5'- gGGCCGagguCGuCGGugcguGCGCagACgGCCGCg -3'
miRNA:   3'- -CCGGC----GCuGCUu----CGCGaaUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 2567 0.67 0.432079
Target:  5'- cGCgCGCaACGAucGGCGCgag-CGCCGCg -3'
miRNA:   3'- cCG-GCGcUGCU--UCGCGaaugGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41331 0.67 0.431127
Target:  5'- cGGUCGUGACGccGguugaguacgaucCGCgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUGCuuC-------------GCGaaUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.