miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 17985 0.66 0.501549
Target:  5'- cGGCCGCaccGACuGGaacAGC-CUgaccgaaugggACCGCCGCg -3'
miRNA:   3'- -CCGGCG---CUG-CU---UCGcGAa----------UGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5484 0.66 0.501549
Target:  5'- aGGCCGaUGGCGcAGCaCcgGCCGCaGCa -3'
miRNA:   3'- -CCGGC-GCUGCuUCGcGaaUGGCGgCG- -5'
28012 5' -58 NC_005887.1 + 28476 0.66 0.501549
Target:  5'- gGGCCGCuucagcucGACGAAGUagacGCgcGCCGgCGg -3'
miRNA:   3'- -CCGGCG--------CUGCUUCG----CGaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 15591 0.66 0.501549
Target:  5'- cGCCGaagcugaGACGcAGCGCacgGgCGUCGCg -3'
miRNA:   3'- cCGGCg------CUGCuUCGCGaa-UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 41528 0.66 0.501549
Target:  5'- cGGCCGCGAuCGcgcGAGCaugGCUguugAUCGCgauCGCg -3'
miRNA:   3'- -CCGGCGCU-GC---UUCG---CGAa---UGGCG---GCG- -5'
28012 5' -58 NC_005887.1 + 6198 0.66 0.501549
Target:  5'- cGCCGCGACGAGGaa---ACCGgCGa -3'
miRNA:   3'- cCGGCGCUGCUUCgcgaaUGGCgGCg -5'
28012 5' -58 NC_005887.1 + 12818 0.66 0.492328
Target:  5'- aGGCCGuCGcgcGCGAcGUGCUguucuacaacgcgcCCGCCGUc -3'
miRNA:   3'- -CCGGC-GC---UGCUuCGCGAau------------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 25054 0.66 0.491308
Target:  5'- cGCCGaacCGGCGuuuGCGCgcgcGgCGCCGCc -3'
miRNA:   3'- cCGGC---GCUGCuu-CGCGaa--UgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 36992 0.66 0.491308
Target:  5'- aGCuCGcCGGCGAGcacGCGCagGCCGUaCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUU---CGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 11994 0.66 0.489271
Target:  5'- aGGUCGCGcccACGuugcagacauccGGCGCacGCaCGCCGCu -3'
miRNA:   3'- -CCGGCGC---UGCu-----------UCGCGaaUG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 37744 0.66 0.488255
Target:  5'- cGCCGCGGCGAGcaucuguugcaucuGCGCggccUGCgccucggcggcuUGCUGCg -3'
miRNA:   3'- cCGGCGCUGCUU--------------CGCGa---AUG------------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 29187 0.67 0.481165
Target:  5'- cGCUGCGAgGAucuGCGCg-GCCuuaaGCUGCg -3'
miRNA:   3'- cCGGCGCUgCUu--CGCGaaUGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 33868 0.67 0.481165
Target:  5'- aGCCuGCGGCagccGAcAGCGCU--CCGUCGCc -3'
miRNA:   3'- cCGG-CGCUG----CU-UCGCGAauGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 5245 0.67 0.481165
Target:  5'- cGGCCGCGcgaucgcCGAGGCug-UGCuCGcCCGCu -3'
miRNA:   3'- -CCGGCGCu------GCUUCGcgaAUG-GC-GGCG- -5'
28012 5' -58 NC_005887.1 + 26943 0.67 0.481165
Target:  5'- uGCgCGuCGACGAucCGCUgcCCGCgCGCg -3'
miRNA:   3'- cCG-GC-GCUGCUucGCGAauGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 1986 0.67 0.481165
Target:  5'- cGCgCGCGACGgcG-GC--ACgGCCGCg -3'
miRNA:   3'- cCG-GCGCUGCuuCgCGaaUGgCGGCG- -5'
28012 5' -58 NC_005887.1 + 8070 0.67 0.481165
Target:  5'- aGCCGCacGGCGAcggcauGCGCaaGCCGCgaGCg -3'
miRNA:   3'- cCGGCG--CUGCUu-----CGCGaaUGGCGg-CG- -5'
28012 5' -58 NC_005887.1 + 28793 0.67 0.481165
Target:  5'- cGGCCuGCucgGGCGGcAGCGCaucGCCGaUCGCa -3'
miRNA:   3'- -CCGG-CG---CUGCU-UCGCGaa-UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 35081 0.67 0.481165
Target:  5'- cGGCCGgggcCGAUGucGCGgUcGCUGCCGa -3'
miRNA:   3'- -CCGGC----GCUGCuuCGCgAaUGGCGGCg -5'
28012 5' -58 NC_005887.1 + 11325 0.67 0.481165
Target:  5'- aGCCGCGGCcu-GCGaauagugGCCugcGCCGCg -3'
miRNA:   3'- cCGGCGCUGcuuCGCgaa----UGG---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.