miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28012 5' -58 NC_005887.1 + 14994 0.66 0.522304
Target:  5'- uGCCGaCGcuCGucuGCGC--GCCGCUGCg -3'
miRNA:   3'- cCGGC-GCu-GCuu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 6676 0.66 0.522304
Target:  5'- cGGCCGC--CGAucGCGC--GCUGCUGUa -3'
miRNA:   3'- -CCGGCGcuGCUu-CGCGaaUGGCGGCG- -5'
28012 5' -58 NC_005887.1 + 8398 0.66 0.522304
Target:  5'- cGCCGCacGCGAcGUGCUcGCCGagCGCc -3'
miRNA:   3'- cCGGCGc-UGCUuCGCGAaUGGCg-GCG- -5'
28012 5' -58 NC_005887.1 + 17338 0.66 0.522304
Target:  5'- uGGCCgGCGGCcgccGGCGCgaGCUGaCGCu -3'
miRNA:   3'- -CCGG-CGCUGcu--UCGCGaaUGGCgGCG- -5'
28012 5' -58 NC_005887.1 + 31439 0.66 0.522304
Target:  5'- aGGCCGgcCGACGucaucuGCGCcgGCUGCagguGCa -3'
miRNA:   3'- -CCGGC--GCUGCuu----CGCGaaUGGCGg---CG- -5'
28012 5' -58 NC_005887.1 + 27978 0.66 0.522304
Target:  5'- cGCCgaGCGGCGAcucgaacaGGUGCccgGCaCGCUGCu -3'
miRNA:   3'- cCGG--CGCUGCU--------UCGCGaa-UG-GCGGCG- -5'
28012 5' -58 NC_005887.1 + 18979 0.66 0.522304
Target:  5'- gGGCaCGCGGCagcauGGCGCagucuaACCaaagGCCGCg -3'
miRNA:   3'- -CCG-GCGCUGcu---UCGCGaa----UGG----CGGCG- -5'
28012 5' -58 NC_005887.1 + 13070 0.66 0.522304
Target:  5'- aGGCCGaucCGugGAacgcGGCGCUcgAUCGCgGa -3'
miRNA:   3'- -CCGGC---GCugCU----UCGCGAa-UGGCGgCg -5'
28012 5' -58 NC_005887.1 + 35337 0.66 0.522304
Target:  5'- cGCCGCGGCGGccGGCcacgaGCUU-CaCGCCcgGCa -3'
miRNA:   3'- cCGGCGCUGCU--UCG-----CGAAuG-GCGG--CG- -5'
28012 5' -58 NC_005887.1 + 842 0.66 0.515
Target:  5'- cGGCCGCGAaGAaagccaaGGUGCccgUggacgcguggcccgcGCCGCCGg -3'
miRNA:   3'- -CCGGCGCUgCU-------UCGCGa--A---------------UGGCGGCg -5'
28012 5' -58 NC_005887.1 + 23976 0.66 0.511883
Target:  5'- cGGCCcacugcucgagcGCGAgGcGGCGCUcgggaaucucCUGCCGCa -3'
miRNA:   3'- -CCGG------------CGCUgCuUCGCGAau--------GGCGGCG- -5'
28012 5' -58 NC_005887.1 + 30804 0.66 0.511883
Target:  5'- cGCCGCG-CGcuGCGC--GCCgaGCUGCu -3'
miRNA:   3'- cCGGCGCuGCuuCGCGaaUGG--CGGCG- -5'
28012 5' -58 NC_005887.1 + 31011 0.66 0.511883
Target:  5'- --gCGUGGCGcGGCGCagGCCacuauucgcagGCCGCg -3'
miRNA:   3'- ccgGCGCUGCuUCGCGaaUGG-----------CGGCG- -5'
28012 5' -58 NC_005887.1 + 41942 0.66 0.511883
Target:  5'- gGGCggCGCGGCGcgucuucgcGGCGCUUGCCcGUcuuuuCGCa -3'
miRNA:   3'- -CCG--GCGCUGCu--------UCGCGAAUGG-CG-----GCG- -5'
28012 5' -58 NC_005887.1 + 4478 0.66 0.511883
Target:  5'- uGCCGCGAaggugccgaaCGgcGCGCgcAUCGCgCGUc -3'
miRNA:   3'- cCGGCGCU----------GCuuCGCGaaUGGCG-GCG- -5'
28012 5' -58 NC_005887.1 + 41099 0.66 0.511883
Target:  5'- aGCUauGCGACGuuuucgcGUGCUgAgCGCCGCg -3'
miRNA:   3'- cCGG--CGCUGCuu-----CGCGAaUgGCGGCG- -5'
28012 5' -58 NC_005887.1 + 40643 0.66 0.511883
Target:  5'- aGGCacUGACGAGcGCGCgccgaucACCGgCCGCa -3'
miRNA:   3'- -CCGgcGCUGCUU-CGCGaa-----UGGC-GGCG- -5'
28012 5' -58 NC_005887.1 + 11115 0.66 0.510846
Target:  5'- uGCgCGCGAagcuggcCGAGGCGCcgUGgCGgCGCa -3'
miRNA:   3'- cCG-GCGCU-------GCUUCGCGa-AUgGCgGCG- -5'
28012 5' -58 NC_005887.1 + 23245 0.66 0.505672
Target:  5'- aGCgGCGGCGGucGGCGCgcaaaagGCgcagcucguggcgguUGCCGCa -3'
miRNA:   3'- cCGgCGCUGCU--UCGCGaa-----UG---------------GCGGCG- -5'
28012 5' -58 NC_005887.1 + 14008 0.66 0.505672
Target:  5'- cGCCGCG-CGccuccgcaaccgccGGCGC--GCCGCCGg -3'
miRNA:   3'- cCGGCGCuGCu-------------UCGCGaaUGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.