miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28013 3' -55.6 NC_005887.1 + 39404 0.71 0.342392
Target:  5'- -aGGAUGGUCgcgGcGGUGCCGcgGCGCUu -3'
miRNA:   3'- agCCUGCCGGa--C-UUAUGGCuaCGCGA- -5'
28013 3' -55.6 NC_005887.1 + 6435 0.73 0.27294
Target:  5'- cCGGACGGCCgcgccGAG-AUCGAagUGCGCg -3'
miRNA:   3'- aGCCUGCCGGa----CUUaUGGCU--ACGCGa -5'
28013 3' -55.6 NC_005887.1 + 34700 0.73 0.236968
Target:  5'- gCGGGCGGCCgucgucgcgcUugCGGUGCGCg -3'
miRNA:   3'- aGCCUGCCGGacuu------AugGCUACGCGa -5'
28013 3' -55.6 NC_005887.1 + 35076 0.77 0.130799
Target:  5'- gCGGGCGGCCgGG--GCCGAUGuCGCg -3'
miRNA:   3'- aGCCUGCCGGaCUuaUGGCUAC-GCGa -5'
28013 3' -55.6 NC_005887.1 + 33216 1.08 0.000845
Target:  5'- gUCGGACGGCCUGAAUACCGAUGCGCUu -3'
miRNA:   3'- -AGCCUGCCGGACUUAUGGCUACGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.