Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28014 | 3' | -54.5 | NC_005887.1 | + | 9561 | 0.67 | 0.624096 |
Target: 5'- uGAAG-CGGCGcGCGCCGAUccugCGCa -3' miRNA: 3'- gCUUCaGCCGUcUGUGGCUGua--GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 28329 | 0.68 | 0.612951 |
Target: 5'- ---cGcCGGCGGcGCGCCGGCgGUUGCGg -3' miRNA: 3'- gcuuCaGCCGUC-UGUGGCUG-UAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 22727 | 0.68 | 0.612951 |
Target: 5'- gCGAGaUCGGCgGGACACUG-C-UCGCGa -3' miRNA: 3'- -GCUUcAGCCG-UCUGUGGCuGuAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 7281 | 0.68 | 0.601823 |
Target: 5'- uCGAAGUCGcGCc--CGCCGACGacggcagcgaccUCGCGu -3' miRNA: 3'- -GCUUCAGC-CGucuGUGGCUGU------------AGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 2173 | 0.68 | 0.601823 |
Target: 5'- gGAcuUCGGCcuGACGCCGGC--CGCGg -3' miRNA: 3'- gCUucAGCCGu-CUGUGGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 37844 | 0.68 | 0.601823 |
Target: 5'- cCGuAGUCGGCgagcAGACGCgCGAUG-CGCGc -3' miRNA: 3'- -GCuUCAGCCG----UCUGUG-GCUGUaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 41259 | 0.68 | 0.590722 |
Target: 5'- uCGgcGUCGGCAauGGCGCCGuCGaccugCGCa -3' miRNA: 3'- -GCuuCAGCCGU--CUGUGGCuGUa----GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 11120 | 0.68 | 0.590722 |
Target: 5'- gCGAAGcUGGCcgAGGCGCCGugGcggCGCa -3' miRNA: 3'- -GCUUCaGCCG--UCUGUGGCugUa--GCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 25379 | 0.68 | 0.579656 |
Target: 5'- cCGuAGUCGaGCu--CGCCGACAUUGCc -3' miRNA: 3'- -GCuUCAGC-CGucuGUGGCUGUAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 6669 | 0.68 | 0.579656 |
Target: 5'- gCGAAGcCGGC---CGCCGAUcgCGCGc -3' miRNA: 3'- -GCUUCaGCCGucuGUGGCUGuaGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 33138 | 0.68 | 0.568636 |
Target: 5'- ---cGUCGGUAGAagcaGCCGACcgUGCc -3' miRNA: 3'- gcuuCAGCCGUCUg---UGGCUGuaGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 27057 | 0.68 | 0.568636 |
Target: 5'- uCGAGGUaugCGGCAGucucguuCGCCGGCGgacgcUCGCc -3' miRNA: 3'- -GCUUCA---GCCGUCu------GUGGCUGU-----AGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 36055 | 0.69 | 0.546761 |
Target: 5'- uCGguGUgGGCAGACcggugcgaACCGACGU-GCGg -3' miRNA: 3'- -GCuuCAgCCGUCUG--------UGGCUGUAgCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 35108 | 0.69 | 0.540249 |
Target: 5'- cCGAGGUCGaugauauuggucgauGCGcccGACGCCGACAgCGCc -3' miRNA: 3'- -GCUUCAGC---------------CGU---CUGUGGCUGUaGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 13186 | 0.69 | 0.535923 |
Target: 5'- gGAgcGGUCGaGCAGGCcgccgGCCGACguguGUCGCu -3' miRNA: 3'- gCU--UCAGC-CGUCUG-----UGGCUG----UAGCGc -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 33643 | 0.69 | 0.533764 |
Target: 5'- aCGAAGcgcuuaccgccgCGGCGGAuCGCCGGgcccugcacCGUCGCGa -3' miRNA: 3'- -GCUUCa-----------GCCGUCU-GUGGCU---------GUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 25952 | 0.69 | 0.525161 |
Target: 5'- aCGguGgccCGGCAGACGCCGAgCAUCuucgacacuucgGCGa -3' miRNA: 3'- -GCuuCa--GCCGUCUGUGGCU-GUAG------------CGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 12657 | 0.69 | 0.524089 |
Target: 5'- aCGAgugGGUCGGCGauuuGcCGCCGACGaagcuuaUCGCGu -3' miRNA: 3'- -GCU---UCAGCCGU----CuGUGGCUGU-------AGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 35077 | 0.69 | 0.503893 |
Target: 5'- -cGGG-CGGCcGGgGCCGAUGUCGCGg -3' miRNA: 3'- gcUUCaGCCGuCUgUGGCUGUAGCGC- -5' |
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28014 | 3' | -54.5 | NC_005887.1 | + | 11387 | 0.7 | 0.493398 |
Target: 5'- gCGAAGUUccucacguacGCGGGCGCCGACAUCa-- -3' miRNA: 3'- -GCUUCAGc---------CGUCUGUGGCUGUAGcgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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